PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1446s0030.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Protein Properties

Length: 111aa MW: 12997 Da PI: 10.6606

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1446s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.9	3.3e-12	6	90	2	89
EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 k+l + d ++r+vl+ + ++ + +ee l+++de+gr+W++++++ ++s+r l++ W Fv++++Lk+gD++ + ld+++ SapurV1A.1446s0030.1.p 6 TKKLNNIDI--ERRIVLSENLIKGFpR-GHEE--YLKFKDEDGRVWTFRCRVpPGGSSRPALSGDWFVFVRSKQLKVGDVIEIALDREK 89 555533333..3457888888877742.3333..6*************9988888889*******************99998765 PP E CS B3 89 e 89 + SapurV1A.1446s0030.1.p 90 D 90 4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	9.263	1	103	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.8E-14	2	90	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.34E-12	3	89	No hit	No description
SuperFamily	SSF101936	2.55E-12	4	89	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0012	5	103	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-9	16	90	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MEKIFTKKLN NIDIERRIVL SENLIKGFPR GHEEYLKFKD EDGRVWTFRC RVPPGGSSRP 60 ALSGDWFVFV RSKQLKVGDV IEIALDREKD RSGVDQFTIR FKKQLDRKRN *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1446s0030.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011002452.1	5e-57	PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBL	A0A2K2AZU2	4e-56	A0A2K2AZU2_POPTR; Uncharacterized protein
STRING	POPTR_0003s00440.1	4e-57	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13561	5	27

Link Out ? help Back to Top
Phytozome	SapurV1A.1446s0030.1.p