PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1440s0010.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 764aa    MW: 83595.7 Da    PI: 5.6237
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1440s0010.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.5e-2096151156
                             TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  SapurV1A.1440s0010.3.p  96 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 151
                             688999***********************************************999 PP
2START217.44.7e-682855051206
                             HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS
                   START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla. 77 
                             ela +a++elv++a+ +ep+W++s     + +n+de++++f+++ +     ++ ea+r+s+vv+m++ +lve l+d++ qW++ +  
  SapurV1A.1440s0010.3.p 285 ELAVAAMEELVRMAQMDEPLWMSSLdgtnSVLNEDEYVRIFPRGIGpkptgFKCEASRESAVVIMNHINLVEYLMDVN-QWSTLFSg 370
                             57899**********************9999************999********************************.******** PP

                             ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEE CS
                   START  78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgili 154
                                +a tlev+s+g      galq+m+ae q+++pl+p R+++fvRy++q+ +g+w++vdvS+d+ ++ p     +R++++pSg+li
  SapurV1A.1440s0010.3.p 371 ivsRALTLEVLSTGvagnynGALQVMTAECQLPTPLAPtRESYFVRYCKQHADGTWAVVDVSLDNLRPSPA----ARCRRRPSGCLI 453
                             ********************************************************************995....************ PP

                             EEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                   START 155 epksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                             +++ ng+skvtwvehv+ ++r +h+l+++lv+sg+a+gak+w+atl+rqce+
  SapurV1A.1440s0010.3.p 454 QEMLNGYSKVTWVEHVEADDRGVHNLYKQLVSSGHAFGAKRWLATLDRQCER 505
                             **************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-2275151IPR009057Homeodomain-like
SuperFamilySSF466891.04E-1982153IPR009057Homeodomain-like
PROSITE profilePS5007116.98993153IPR001356Homeobox domain
SMARTSM003891.0E-1994157IPR001356Homeobox domain
CDDcd000863.81E-1996154No hitNo description
PfamPF000466.1E-1896151IPR001356Homeobox domain
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
SuperFamilySSF559617.85E-34276507No hitNo description
PROSITE profilePS5084843.814276508IPR002913START domain
CDDcd088752.73E-128280504No hitNo description
SMARTSM002342.2E-65285505IPR002913START domain
PfamPF018522.5E-57286505IPR002913START domain
Gene3DG3DSA:3.30.530.205.4E-4381470IPR023393START-like domain
SuperFamilySSF559619.77E-24524755No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MTAGMMIPAR NMPSMIGIHG NVAGFGSSSE LALGQIMFQP NMMEGQLHRL DMAQNTHEGD  60
MARIRDDEFD STNTKSGGSE NQDGASGDDQ DPRPKKKRYH RHTQHQIQEM ESFFKECPHP  120
DDKQRKELSR ELGLEPLQVK FWFQNKRTQM KTQHERHENT QLRNENDKLR ADNMRYREAL  180
SNASCPNCGG PTAIGEMSFD EHHLRLENAR LREEIDRISA IAAKYVGKPV VNYPLISAPM  240
PPRPLDLGVG NFGGQPGIEG EIYGDGDLLR SINAPTEADK PMIIELAVAA MEELVRMAQM  300
DEPLWMSSLD GTNSVLNEDE YVRIFPRGIG PKPTGFKCEA SRESAVVIMN HINLVEYLMD  360
VNQWSTLFSG IVSRALTLEV LSTGVAGNYN GALQVMTAEC QLPTPLAPTR ESYFVRYCKQ  420
HADGTWAVVD VSLDNLRPSP AARCRRRPSG CLIQEMLNGY SKVTWVEHVE ADDRGVHNLY  480
KQLVSSGHAF GAKRWLATLD RQCERLASAM ATNIPAGDVG VITNQEGRKS MMKLAERMVI  540
SFCAGVSAST AHTWTTLSGT GADDVRVMTR KSVDDPGRPP GIVLSAATSF WLPVPPKRVF  600
DFLRDENTRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL RVNSANSSQS NMLILQESCT  660
DQTASFVIYA PVDIVAMNVV LNGGDPDYVA LLPSGFAVLP DGTAAHGGGM EESAGGSLLT  720
VAFQILVDSV PTAKLSLGSV ATVNNLIACT VERIKASLSC ESA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1440s0010.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005112.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLB9IAE60.0B9IAE6_POPTR; Uncharacterized protein
STRINGPOPTR_0014s15010.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2