PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1412s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TALE
Protein Properties Length: 482aa    MW: 53670.5 Da    PI: 8.2826
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1412s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.33.9e-112963331954
                             HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                             Fe   ++yp+ +e++ LA+++gL+ +qV++WF N R +
  SapurV1A.1412s0040.1.p 296 FEHflHPYPTDSEKQALAQQTGLSRTQVSNWFINARVR 333
                             664459******************************88 PP
2BELL92.54.1e-30163233272
                    BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                              +e+q k +kL+ +l+eV++rYk y++q+q v++sFe+vaglg+a+pY+  A k++S+hF +Lk+a+ ++i
  SapurV1A.1412s0040.1.p 163 GMEHQWKSSKLILMLDEVYRRYKLYCQQMQSVVASFETVAGLGNAAPYVCCAIKTVSKHFTSLKNALLDKI 233
                             589****************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.3E-36109231IPR006563POX domain
PfamPF075263.7E-34114229IPR006563POX domain
PROSITE profilePS5007112.584274337IPR001356Homeobox domain
SMARTSM003891.7E-12277341IPR001356Homeobox domain
CDDcd000862.61E-13277338No hitNo description
SuperFamilySSF466893.55E-18280345IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28280341IPR009057Homeodomain-like
PfamPF059201.1E-18294333IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAQNIEPFHV PQQNRKNKLR VTTQSNQEQQ NPPTPLFSRQ APMNPSQSSS FSSLQSLKDM  60
NYQPLTSQGL SLCLSFQLDN NQRYNAASVS GDYINGEMRS SVGPFGPFTG YASILMSSRF  120
LKPAQQILDE ICGVINCANA NFPLDGLSES ETMKESTAFP SDGMEHQWKS SKLILMLDEV  180
YRRYKLYCQQ MQSVVASFET VAGLGNAAPY VCCAIKTVSK HFTSLKNALL DKIQLTGRTF  240
AESSVAKEKS PRYGTAERGP GNQNPSRNLN FIQHSVWRSQ RGLPDHAVAV LRTWLFEHFL  300
HPYPTDSEKQ ALAQQTGLSR TQVSNWFINA RVRLWKPMVE EVHMLESQQT QAPSETVNQS  360
ASMPSDLPLE KQPRSTPHQN TNQMTRTRPR SQNEPPDVSK LQRQDPVNIY GNNLSGNCHS  420
AGVSGGEGVS LALGLPQNKG IDLSWPLPMS MPHRDNMEMI GMMDSAPATG FELEKQHFGK  480
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-16278334865Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1412s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315195.20.0BEL1-like homeodomain protein 9 isoform X1
SwissprotQ9LZM85e-73BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLB9HT490.0B9HT49_POPTR; Uncharacterized protein
STRINGPOPTR_0008s06130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.13e-75TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]