PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1408s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 370aa    MW: 43153.4 Da    PI: 8.7745
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1408s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.56e-076788223
                            EETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                            +C++Cg sF+ + +L++H+++H
  SapurV1A.1408s0040.1.p 67 TCEKCGASFKKPAYLVQHMQSH 88
                            6*******************99 PP
2zf-C2H214.50.000194118123
                             EEET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                             ++C+  dC+ s++rk++L+rH+  H
  SapurV1A.1408s0040.1.p  94 FRCSvdDCHASYRRKDHLTRHLLHH 118
                             89*******************9987 PP
3zf-C2H221.37e-07123148123
                             EEET..TTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                             +kC+  +C++ F  +snLkrH r  H
  SapurV1A.1408s0040.1.p 123 FKCEleNCDRKFVYPSNLKRHVRElH 148
                             89*********************988 PP
4zf-C2H220.71.1e-06163187123
                             EEET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                             y+C+   Cgk F+ +s L++H  +H
  SapurV1A.1408s0040.1.p 163 YVCQelGCGKAFRYPSKLQKHVDSH 187
                             99*******************9988 PP
5zf-C2H214.78.9e-05255279223
                             EET..TTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                             kC+   C  +Fs+k nL++H +  H
  SapurV1A.1408s0040.1.p 255 KCHfkGCQHTFSTKTNLNQHVKAvH 279
                             7*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355242244IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.8712249IPR007087Zinc finger, C2H2
SMARTSM003550.0076688IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-66687IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.0696693IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SuperFamilySSF576674.38E-1074126No hitNo description
Gene3DG3DSA:3.30.160.601.2E-1088120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.06194118IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.70294123IPR007087Zinc finger, C2H2
PROSITE patternPS00028096118IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-7121149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.59E-8121187No hitNo description
SMARTSM003550.002123148IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.799123153IPR007087Zinc finger, C2H2
PROSITE patternPS000280125148IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-8159187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0012163187IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.385163192IPR007087Zinc finger, C2H2
PROSITE patternPS000280165187IPR007087Zinc finger, C2H2
SMARTSM003555.3195220IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280197220IPR007087Zinc finger, C2H2
SMARTSM0035518223244IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.27E-8238289No hitNo description
SMARTSM003550.0018254279IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.884254284IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-5255280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280256279IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-6281307IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.099285311IPR007087Zinc finger, C2H2
SMARTSM003552.5285311IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280287311IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MVMMEAAAEK ERVVIFRDIR RYYCDYCGIC RSKKSLITSH VLTHHKEEMD KEKIDGDEVK  60
QGVKSNTCEK CGASFKKPAY LVQHMQSHSL ERPFRCSVDD CHASYRRKDH LTRHLLHHEG  120
KLFKCELENC DRKFVYPSNL KRHVRELHDE SSPCGSVGGE KQYVCQELGC GKAFRYPSKL  180
QKHVDSHVNL DSVEAMCLEP GCMKHFSNKK CLKAHIQSCH QYINCDICGT KQLRKNIKRH  240
LRTHEPVSCS TERIKCHFKG CQHTFSTKTN LNQHVKAVHL EQRPYECGFP GCGRRFSYKH  300
VRDNHEKSGL HVYTPGDFME SDQQFRSRPR GGRKRKFPTV EMLIRKRVTP PTEFDECHTF  360
LHEMETEDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A4e-157121520155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D4e-157121520155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1327335RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1408s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446707.10.0transcription factor IIIA
SwissprotQ84MZ41e-143TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2K1WRF60.0A0A2K1WRF6_POPTR; Uncharacterized protein
STRINGPOPTR_0013s11300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-145transcription factor IIIA