PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.1394s0060.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 466aa MW: 50985.6 Da PI: 7.8423 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.3 | 5.5e-38 | 76 | 234 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................... 65 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a+ +i+el+ + SapurV1A.1394s0060.2.p 76 SGGKDRHSKVWTSQGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAQDSIDELPPLnhpfpdtpkqlsdekrtsdgteq 162 689*************************************************************88776666555554444333322 PP TCP 66 ssssaseceaesssssasnsssg...............kaaksaakskksqksaasalnlak....esrakarararertrekmrik 133 +++sa + + + +a+s+ s++s+ s l+la+ r kar+rarert+++ ++ SapurV1A.1394s0060.2.p 163 GFDSA-----------------DvelndpnfnqnqnqhLSLSRSACSSTSETSKGSGLSLARsglrVNRVKARERARERTAKERENE 232 22222.................02222222222223334444444555555555555666654444778************999988 PP TCP 134 nk 135 ++ SapurV1A.1394s0060.2.p 233 TR 234 65 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.2E-42 | 77 | 230 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.995 | 78 | 136 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.64 | 211 | 229 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 466 aa Download sequence Send to blast |
MEAEEIQRQP CKFSRGGSGR SDSSRIAQNG CGDHQYPDEE EDGELKRSNP SSGGGAINRL 60 REWHHSSRII RVSRASGGKD RHSKVWTSQG LRDRRVRLSV TTAIQFYDLQ DRLGYDQPSK 120 AVEWLIKAAQ DSIDELPPLN HPFPDTPKQL SDEKRTSDGT EQGFDSADVE LNDPNFNQNQ 180 NQHLSLSRSA CSSTSETSKG SGLSLARSGL RVNRVKARER ARERTAKERE NETRNAHHHP 240 ISQNSTFTEL LTGGIGNVSN NNNSNSSSSN NNNNAASPSE ANLFQKAAAS RQWPLTPMDY 300 IGTGLLGPSS SRAAHHSSGF PGQIQLGNSI PQPMTMSVPP FNVSGENHQE QLQHFPFVSD 360 HLIPVAATTQ PVGDYNLNFT MSSSLAAGFN RGTLQSNSSS PSFFSHLQRF STSSPIDGST 420 TNVPFLLGAQ PQSMENHHHH QFPHGLQLCY GDGTRHSDQK GKGKN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-24 | 83 | 137 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-24 | 83 | 137 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.1394s0060.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002305700.2 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_024455006.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_024455007.1 | 0.0 | transcription factor TCP2 | ||||
TrEMBL | A0A3S9LXU2 | 0.0 | A0A3S9LXU2_POPTO; Transcription factor TCP2-like | ||||
STRING | POPTR_0004s06440.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18390.2 | 8e-43 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.1394s0060.2.p |