PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1383s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 112aa    MW: 12726.6 Da    PI: 9.216
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1383s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.72e-1314861288
                            HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                      B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88
                            + +rl lp +++e+  ++   +  l+++de+gr+W+++++ + ++++   + + W +Fv+++gL +gD+vv+    ++
  SapurV1A.1383s0100.1.p 14 E-RRLLLPENCLEDLRSD--LESYLKFKDEEGRVWTFRCRASPGGRSkPAFYGDWFSFVREKGLGVGDVVVIIS--DK 86
                            3.469*******999766..4448***************77555544788999******************983..33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.2062104IPR003340B3 DNA binding domain
SMARTSM010190.0013498IPR003340B3 DNA binding domain
CDDcd100175.45E-154102No hitNo description
Gene3DG3DSA:2.40.330.109.4E-14489IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-13589IPR015300DNA-binding pseudobarrel domain
PfamPF023623.6E-111587IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MENITKKLNI TDVERRLLLP ENCLEDLRSD LESYLKFKDE EGRVWTFRCR ASPGGRSKPA  60
FYGDWFSFVR EKGLGVGDVV VIISDKEKNI AAGGCFKIKI KKPASKHYQN E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1383s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002452.12e-35PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBLA0A2K2AYG51e-53A0A2K2AYG5_POPTR; B3 family protein
STRINGPOPTR_0004s22980.13e-53(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13561527