PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1374s0070.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 422aa MW: 47722.6 Da PI: 5.1185 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.3 | 2.1e-16 | 62 | 145 | 8 | 99 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++ + g+l+l+ kf+++h + +e+++++ledesg+s e + ++ + l++GWk+F ++L egD+vvF+l++ ++f +v SapurV1A.1374s0070.4.p 62 PSFVSGGWLRLSQKFCKDHL-P-KEDTEIVLEDESGESLETVY--HAHKMG--LSGGWKKFTMMHKLSEGDVVVFHLVKPTKF--KV 140 44556789********9995.3.35679***************..777755..***********************9987777..88 PP EEE-S CS B3 95 kvfrk 99 ++r+ SapurV1A.1374s0070.4.p 141 YIVRA 145 88876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.16E-23 | 50 | 147 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-22 | 50 | 147 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.03E-21 | 54 | 144 | No hit | No description |
PROSITE profile | PS50863 | 11.335 | 55 | 146 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.0E-18 | 56 | 146 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-14 | 62 | 145 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MTANKKVVQN ISVKSKSHKR KRSAVEDLCD NDDVKFAVMK RAEEIVANLA PQFPSMIKSM 60 LPSFVSGGWL RLSQKFCKDH LPKEDTEIVL EDESGESLET VYHAHKMGLS GGWKKFTMMH 120 KLSEGDVVVF HLVKPTKFKV YIVRANGSEE ADGDLSHLQM EACARQMNST NDTTDRKNLS 180 KISTEMEDQD LEHLLLDNSE EDIEKKRMVT FVSKLRPEID QSEDEILDLG FEITDGIRVS 240 ESVSIDFEEV KSFEDFDIIA NGLVINSELS MPLQSKYYEL CCSQKSFLHD HILEGLNCKL 300 VAGIIVQIIT IADGLRDPKL ATVQEKFGAW EKILKSFQGL GMNVDFLLAR LEQLMDISSK 360 SKRHKNATFE RAIAEEETRT LEARLLEAKK TGNRLDVEIQ TLGPSTENLE LKFQEMAKAP 420 W* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1374s0070.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464278.1 | 1e-163 | B3 domain-containing protein Os01g0234100 | ||||
TrEMBL | B9HRZ5 | 1e-166 | B9HRZ5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s10610.1 | 1e-167 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-31 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1374s0070.4.p |