PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1374s0070.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 422aa    MW: 47722.6 Da    PI: 5.1185
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1374s0070.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.1e-1662145899
                             -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                      B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                             ++  + g+l+l+ kf+++h  + +e+++++ledesg+s e  +    ++ +  l++GWk+F   ++L egD+vvF+l++ ++f  +v
  SapurV1A.1374s0070.3.p  62 PSFVSGGWLRLSQKFCKDHL-P-KEDTEIVLEDESGESLETVY--HAHKMG--LSGGWKKFTMMHKLSEGDVVVFHLVKPTKF--KV 140
                             44556789********9995.3.35679***************..777755..***********************9987777..88 PP

                             EEE-S CS
                      B3  95 kvfrk 99 
                              ++r+
  SapurV1A.1374s0070.3.p 141 YIVRA 145
                             88876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-2350147IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-2250147IPR015300DNA-binding pseudobarrel domain
CDDcd100172.03E-2154144No hitNo description
PROSITE profilePS5086311.33555146IPR003340B3 DNA binding domain
SMARTSM010198.0E-1856146IPR003340B3 DNA binding domain
PfamPF023621.2E-1462145IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MTANKKVVQN ISVKSKSHKR KRSAVEDLCD NDDVKFAVMK RAEEIVANLA PQFPSMIKSM  60
LPSFVSGGWL RLSQKFCKDH LPKEDTEIVL EDESGESLET VYHAHKMGLS GGWKKFTMMH  120
KLSEGDVVVF HLVKPTKFKV YIVRANGSEE ADGDLSHLQM EACARQMNST NDTTDRKNLS  180
KISTEMEDQD LEHLLLDNSE EDIEKKRMVT FVSKLRPEID QSEDEILDLG FEITDGIRVS  240
ESVSIDFEEV KSFEDFDIIA NGLVINSELS MPLQSKYYEL CCSQKSFLHD HILEGLNCKL  300
VAGIIVQIIT IADGLRDPKL ATVQEKFGAW EKILKSFQGL GMNVDFLLAR LEQLMDISSK  360
SKRHKNATFE RAIAEEETRT LEARLLEAKK TGNRLDVEIQ TLGPSTENLE LKFQEMAKAP  420
W*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1374s0070.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464278.11e-163B3 domain-containing protein Os01g0234100
TrEMBLB9HRZ51e-166B9HRZ5_POPTR; Uncharacterized protein
STRINGPOPTR_0009s10610.11e-167(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-31B3 family protein