PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1373s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 367aa    MW: 40623.2 Da    PI: 4.8909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1373s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH171.1e-053153541054
                             HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             r R +ri + ++ L+ l+P      ++K s + iLe+Av+Y+ksL
  SapurV1A.1373s0010.1.p 315 RMRKERIHETISILQNLIPGG----KGKDS-IVILEEAVQYLKSL 354
                             88999**************97....58888.99**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.353305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-6315357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.56E-5315355No hitNo description
Gene3DG3DSA:4.10.280.101.1E-5315357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGEDWGSLFP QQRFNWQSPN SNYLGASHAF RQQNTRTLVM DPNINMVSTN GVRYPFTEVL  60
HSQASQENEP HGWFNGLPCF RLALMPTSNS VLKEKRPLLD SVLKEKLPTA PPDDKEDIMP  120
KAVSGCDKKR FLFFDQSGDQ TTLIFSSGVG PPVQRLKSWI PKPTVGFDLN REIPGAKESQ  180
NFHLGPITSD EFVEDDGIDM HEDTEELNAL LYSDDSSGYS DDEVTSTGHS PSTMTTHDKQ  240
DWFDGSTEEV ASSNGSIKKR KLFDGGYIDG PSLMDTATSV KPTSCFGYEK DAESRCDNVT  300
NSVSHEMGSE SGNKRMRKER IHETISILQN LIPGGKGKDS IVILEEAVQY LKSLKFKAKA  360
VGLDAP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1373s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306548.10.0transcription factor bHLH145
TrEMBLB9H6X20.0B9H6X2_POPTR; Uncharacterized protein
STRINGPOPTR_0005s17690.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF821946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-08bHLH family protein