PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1366s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 427aa    MW: 48131.4 Da    PI: 7.7227
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1366s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS397.41.5e-121294253373
                    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal........ 81 
                             +lL++cA+ +s++d ++a++lL+ +   +sp+gd+++Rl+  f++AL+ rl+r+++ ++ a  p   s ++   ++ ++        
  SapurV1A.1366s0020.1.p  29 QLLVTCADLISQSDYSAAKRLLSIVFSDSSPYGDSVERLVYQFVRALSLRLNRHGTPTSTAPVPGVFSVNR---SIVSTcppcgtnn 112
                             89***************************************************999999888888887444...3333345577777 PP

                    GRAS  82 ...............kl..fsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTg 146
                                            ++  +++++P+++fshltaNqaIlea+ g  +++HiiDfdi++G+QWp+L+qaLa+R+    ++pp+lRiTg
  SapurV1A.1366s0020.1.p 113 kmlscydsdqetlrsCYlsLNQITPFIRFSHLTANQAILEAIRGGqKAIHIIDFDIMHGVQWPPLMQALADRSsntlHPPPMLRITG 199
                             7777788888877762256***********************9876999************************877778******** PP

                    GRAS 147 vgspesgskeeleetgerLakfAeelgvpfefnvl..vakrledl...eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevL 228
                              g+    + + l++tg+rL kfA++lg++f+f++l  + ++l++l    ++++ + p+EalaVn+vl lhr+l+++         +L
  SapurV1A.1366s0020.1.p 200 TGH----DLNILHRTGDRLLKFAQSLGLRFQFHPLllLDNDLTSLalhLPSAITLLPDEALAVNCVLYLHRFLKDDSREL---LLFL 279
                             ***....9**************************97633455555222578899999****************6555444...59** PP

                    GRAS 229 klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                             + +k l+P+vv+++e+ea+hn++ Fl+rfleal++y alfdslea+lp++s+er  vE+ ++grei+++va+eg+ rrerh+++e+W
  SapurV1A.1366s0020.1.p 280 HKIKALNPTVVTIAEREANHNQPLFLQRFLEALDHYKALFDSLEATLPPNSRERLAVEQIWFGREIMDIVAAEGEGRRERHQKFETW 366
                             *************************************************************************************** PP

                    GRAS 316 rerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                             +++l+++GF++vpls +a +qaklllr ++ s+gy+++  ++s++lgW++++L+s+S+W
  SapurV1A.1366s0020.1.p 367 EMMLKSVGFNKVPLSPFALAQAKLLLRLHYpSEGYQLQILKNSFFLGWQNHSLFSISSW 425
                             *********************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.041405IPR005202Transcription factor GRAS
PfamPF035145.0E-11929425IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MLGSLSQLMS SSSSHVQDQE VPRPQTAFQL LVTCADLISQ SDYSAAKRLL SIVFSDSSPY  60
GDSVERLVYQ FVRALSLRLN RHGTPTSTAP VPGVFSVNRS IVSTCPPCGT NNKMLSCYDS  120
DQETLRSCYL SLNQITPFIR FSHLTANQAI LEAIRGGQKA IHIIDFDIMH GVQWPPLMQA  180
LADRSSNTLH PPPMLRITGT GHDLNILHRT GDRLLKFAQS LGLRFQFHPL LLLDNDLTSL  240
ALHLPSAITL LPDEALAVNC VLYLHRFLKD DSRELLLFLH KIKALNPTVV TIAEREANHN  300
QPLFLQRFLE ALDHYKALFD SLEATLPPNS RERLAVEQIW FGREIMDIVA AEGEGRRERH  360
QKFETWEMML KSVGFNKVPL SPFALAQAKL LLRLHYPSEG YQLQILKNSF FLGWQNHSLF  420
SISSWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-61284265375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1366s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090440.0AC209044.1 Populus trichocarpa clone POP057-J01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321384.10.0scarecrow-like protein 18
SwissprotQ9ZWC51e-139SCL18_ARATH; Scarecrow-like protein 18
TrEMBLB9IDL70.0B9IDL7_POPTR; Uncharacterized protein
STRINGPOPTR_0015s01070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129262133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-136GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]