PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1345s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | CPP | ||||||||
Protein Properties | Length: 486aa MW: 53690 Da PI: 6.9111 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 44.8 | 2.4e-14 | 91 | 130 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++++C+Ck+skClk+YCeCfa+g++C+e C+C +C+N+ e+ SapurV1A.1345s0030.1.p 91 SHRQCHCKQSKCLKLYCECFASGSYCDE-CSCANCHNNVEN 130 5789***********************9.********9875 PP | |||||||
2 | TCR | 49.9 | 6.1e-16 | 176 | 213 | 2 | 39 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 + kgC+Ck++ Clk+YCeCf+a+ Cse+CkC +CkN SapurV1A.1345s0030.1.p 176 HIKGCHCKRTGCLKNYCECFQANILCSENCKCVSCKNW 213 789**********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 7.1E-15 | 90 | 130 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 34.033 | 91 | 215 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.8E-11 | 93 | 127 | IPR005172 | CRC domain |
SMART | SM01114 | 2.1E-17 | 175 | 216 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-12 | 178 | 212 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MTSFSPPETV ESVEGEVGKS DFTPRKLVFT EFGLSPVFSA SPLPTSPQER LLSQTKLHVL 60 WRYPLSVKKS ESPRIFLPQD RTKIIDGTPK SHRQCHCKQS KCLKLYCECF ASGSYCDECS 120 CANCHNNVEN EDVRREATEC ILKRNPNAFK PKIIGSPCTP QDEGDASTDV LVMAKHIKGC 180 HCKRTGCLKN YCECFQANIL CSENCKCVSC KNWEVSELGM VATLENHCKT KANIQQANAN 240 SSNAIVSSSH SFSQESRKRT FQELSDSNMR DTEIHELTKH HSVNPVGVYV SIPTLHADCV 300 CPIASSAALG SSKPTYRSLL ADAIHPLDAI ELCSLLVAVS EAAKFLADEQ CKAEIKGVKE 360 CVQDCKKEPD IHQVVPRNQY PGSQTDITVM DKSRSCDIGI QDGGPFSSEG DDLMRDKKDK 420 LFTRSASLDQ NLNHGCNENV IKEHERLVLT CLKDCLGKLI AFGTMEGNRF EHLSTCNINQ 480 DLKPG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-26 | 86 | 216 | 5 | 124 | Protein lin-54 homolog |
5fd3_B | 3e-26 | 86 | 216 | 5 | 124 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1345s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209000 | 1e-145 | AC209000.1 Populus trichocarpa clone POP023-H09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002299717.3 | 0.0 | protein tesmin/TSO1-like CXC 6 | ||||
TrEMBL | A0A3N7EAL7 | 0.0 | A0A3N7EAL7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s18550.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22559 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20110.1 | 3e-82 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1345s0030.1.p |