PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1318s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 319aa    MW: 35746.1 Da    PI: 4.56
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1318s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21e-141461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT +Ed++l++ +   G  +W+++++  g+ R++k+c++rw +yl
  SapurV1A.1318s0060.1.p 14 KGPWTSDEDKKLINFILSNGQCCWRSVPKLAGLLRCGKSCRLRWTNYL 61
                            79******************************99************97 PP
2Myb_DNA-binding521.6e-1667111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg  ++ E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
  SapurV1A.1318s0060.1.p  67 RGVLSEYEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                             5666888***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-20563IPR009057Homeodomain-like
PROSITE profilePS5129413.511961IPR017930Myb domain
SuperFamilySSF466893.11E-2611108IPR009057Homeodomain-like
SMARTSM007176.5E-111363IPR001005SANT/Myb domain
PfamPF002492.1E-131461IPR001005SANT/Myb domain
CDDcd001676.86E-81661No hitNo description
PROSITE profilePS5129425.41962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2464116IPR009057Homeodomain-like
SMARTSM007171.4E-1466114IPR001005SANT/Myb domain
PfamPF002492.5E-1467111IPR001005SANT/Myb domain
CDDcd001675.83E-1174112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTSD EDKKLINFIL SNGQCCWRSV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGVL SEYEEKMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPLTHRPLP TIETPPPPPP PPLQQENQVQ NNMQGLEQRA GQQQSSSTND VSELDQNEEP  180
ETSLQSAITQ DEENNMGRSY ETMEVVNDFC IDEVPLIEAH EMLVPGGPSP STTATSSSSS  240
SSSSLYGSNS ILDELLLPDF EWPINNVEIG SWDDDLSSLD FLFSDVDSGR KQATMFDPFL  300
DQCPGMILDQ DSWTYGLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1318s0060.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007235.11e-177PREDICTED: protein ODORANT1-like
SwissprotQ9C7U71e-93MYB20_ARATH; Transcription factor MYB20
TrEMBLB9H3B11e-174B9H3B1_POPTR; Uncharacterized protein
STRINGPOPTR_0004s08480.11e-175(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65334142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.11e-88myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]