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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | SapurV1A.1302s0050.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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| Family | bZIP | ||||||||
| Protein Properties | Length: 350aa MW: 38412 Da PI: 7.5406 | ||||||||
| Description | bZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | bZIP_1 | 29.7 | 1.4e-09 | 176 | 234 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
kr++r NR +A rs +RK ++ eLe+kv++L++e ++L ++ l+ + l+ e+
SapurV1A.1302s0050.1.p 176 KRAKRILANRQSAARSKERKIKYASELERKVQTLQTEATTLSAQVTILQRDTDGLTVEN 234
9*****************************************99988887777777666 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00338 | 1.7E-15 | 172 | 236 | IPR004827 | Basic-leucine zipper domain |
| PROSITE profile | PS50217 | 10.852 | 174 | 237 | IPR004827 | Basic-leucine zipper domain |
| Pfam | PF00170 | 2.5E-8 | 176 | 228 | IPR004827 | Basic-leucine zipper domain |
| Gene3D | G3DSA:1.20.5.170 | 1.4E-10 | 176 | 228 | No hit | No description |
| SuperFamily | SSF57959 | 9.14E-11 | 176 | 226 | No hit | No description |
| CDD | cd14703 | 7.90E-22 | 177 | 226 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 350 aa Download sequence Send to blast |
MELNKFRGKR PMIVDIEQMP ETPHRGNHHR RAHSDTSFRF DDLLIFDASD FDLSSLDDLP 60 TPNTTTYPPP AAPMAVDSLS DDSTSNGQNQ KPKPVNHLRS LSMDSGFFDG LGLGAAGGGD 120 EKLGGQAVAG DKRAADHHRH SYSMDGSFEE ESLMIDGLKK AMAPERLAEL ALIDPKRAKR 180 ILANRQSAAR SKERKIKYAS ELERKVQTLQ TEATTLSAQV TILQRDTDGL TVENKELKLR 240 LQAMEQQAHL REALNEALRE EVQRLRIAAG QIQSVNGNPF NRGVAPQFPS HQILPPFGNQ 300 QTQQHHQQQL IHMPQSSTAG QTLNGQPALA SQTLARGTNI TGRTLSAGI* |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription activator that binds specifically to the VIP1 response elements (VREs) DNA sequence 5'-ACNGCT-3' found in some stress genes (e.g. TRX8 and MYB44), when phosphorylated/activated by MPK3. Required for Agrobacterium VirE2 nuclear import and tumorigenicity. Promotes transient expression of T-DNA in early stages by interacting with VirE2 in complex with the T-DNA and facilitating its translocation to the nucleus, and mediates stable genetic transformation by Agrobacterium by binding H2A histone. Prevents cell differentiation and shoot formation. Limits sulfate utilization efficiency (SUE) and sulfate uptake, especially in low-sulfur conditions. {ECO:0000269|PubMed:11432846, ECO:0000269|PubMed:12124400, ECO:0000269|PubMed:15108305, ECO:0000269|PubMed:15824315, ECO:0000269|PubMed:17947581, ECO:0000269|PubMed:19820165, ECO:0000269|PubMed:20547563}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | SapurV1A.1302s0050.1.p |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Transcriptionally activated during the acquisition of pluripotentiality (in protoplasts) by pericentromeric chromatin decondensation and DNA demethylation. Targeted to degradation by the proteasome by VBF and Agrobacterium virF in SCF(VBF) and SCF(virF) E3 ubiquitin ligase complexes after mediating T-DNA translocation to the nucleus. {ECO:0000269|PubMed:15108305}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
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| Source | Hit ID | E-value | Description | |||
| GenBank | EF148222 | 0.0 | EF148222.1 Populus trichocarpa clone WS0128_N17 unknown mRNA. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011044198.1 | 0.0 | PREDICTED: transcription factor VIP1-like | ||||
| Swissprot | Q9MA75 | 2e-84 | VIP1_ARATH; Transcription factor VIP1 | ||||
| TrEMBL | B9H7R0 | 1e-178 | B9H7R0_POPTR; Uncharacterized protein | ||||
| STRING | POPTR_0005s21300.1 | 1e-179 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF5214 | 34 | 50 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G43700.1 | 6e-57 | VIRE2-interacting protein 1 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | SapurV1A.1302s0050.1.p |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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