PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1296s0050.18.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARR-B
Protein Properties Length: 469aa    MW: 52215.4 Da    PI: 5.4278
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1296s0050.18.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.72.5e-23309358151
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                              k +++WtpeLH++Fv+av++L G ++A+P+++lelmkv++Lt+++v+SHLQ
  SapurV1A.1296s0050.18.p 309 KMKVDWTPELHKKFVQAVDKL-GVDQAIPSRVLELMKVESLTRHNVASHLQ 358
                              5689*****************.***************************** PP
2Response_reg24.91e-09201261109
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl+ d++++ +  +++ le  +y +v ++ +  eal  + ++   +++ ++ ++ ++++G   +k +++++ +lp i+ +     +
  SapurV1A.1296s0050.18.p  20 VLLLDEDNSSAAEIKSKLEAMDY-IVYTFCNENEALSAISNEPgsFHVAFVEVSTSNSNGC--FKFLETAK-DLPTIMTSNIHCLN 101
                              7999999****************.***************999999**************94..66666666.9****9999999** PP

                              HHHHHHHTTESEEEESS--HHHHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeelvk 109
                              ++ +++ +Ga +fl Kp  +++l++
  SapurV1A.1296s0050.18.p 102 TMMKCIALGAVEFLRKPLFEDKLRN 126
                              *****************99999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.84E-1416134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.8E-1516139No hitNo description
PROSITE profilePS5011019.20319132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-620126IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.83E-721131No hitNo description
PROSITE profilePS5129410.718306365IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-22307360IPR009057Homeodomain-like
SuperFamilySSF466894.48E-14308359IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-21309358IPR006447Myb domain, plants
PfamPF002497.4E-6312358IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MVCTTDELSA WKDFPKGLRV LLLDEDNSSA AEIKSKLEAM DYIVYTFCNE NEALSAISNE  60
PGSFHVAFVE VSTSNSNGCF KFLETAKDLP TIMTSNIHCL NTMMKCIALG AVEFLRKPLF  120
EDKLRNIWQH VVHKAFNAGG SVQSESLKPI KDSIVSMLEL KMELEENEDE NMEKTENESL  180
AQESNEQESP ASDEHLAPST RQFKQGGQLL DDGDCQDHIN CSIEKVSGEQ EGESKSVETT  240
CAMSQETLQA GHPPCFIETV IEDTDDLTDG VKIENNIHHN PQNKDSLNHS NDVVSDLHTS  300
YGTRANRKKM KVDWTPELHK KFVQAVDKLG VDQAIPSRVL ELMKVESLTR HNVASHLQPI  360
KYHCIFPGRN IECEGGLFCP RKMTGDGRII EIKYTGVIIH INLSWRTLHI ILTMIFQPAR  420
SILFGELQVV TQLVCICGAH PAIPHGPRQK FGTGSLIQGC MRMHGVAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-15307361357ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1296s0050.18.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0289210.0CT028921.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454055.10.0two-component response regulator-like APRR2 isoform X3
SwissprotQ6LA431e-103APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A3N7ESN10.0A0A3N7ESN1_POPTR; Uncharacterized protein
STRINGPOPTR_0003s08600.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.58e-93ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]