PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1271s0060.13.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 281aa    MW: 30815.6 Da    PI: 10.1652
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1271s0060.13.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1291.8e-40178253176
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                              +CqvegC+ dls+ak+yhr+h+vCe hsk+++v+v+gle+rfCqqCsrfh lsefDe+k+sCrrrL++hn+rrrk+
  SapurV1A.1271s0060.13.p 178 RCQVEGCNLDLSSAKDYHRKHRVCESHSKCQKVIVAGLERRFCQQCSRFHGLSEFDEKKKSCRRRLSDHNARRRKQ 253
                              6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-32172240IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.445176253IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.24E-38177257IPR004333Transcription factor, SBP-box
PfamPF031102.3E-30179253IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEWNGKPHLQ WDWESLIMFN GITTENSKQF IPTDLETDGE KGTDSRFFYS SGSASRSGGS  60
SSDLELPYFS KNSKSASINS SSAGEVKTSK FTLEASKANS FDYNKIGKAK TASTPSTIKA  120
SAGSGDQLLG LKLGKRIYFE DACAGSHAQS SSVSTIPVPS FTPAKKLKPT VQSQHAPRCQ  180
VEGCNLDLSS AKDYHRKHRV CESHSKCQKV IVAGLERRFC QQCSRFHGLS EFDEKKKSCR  240
RRLSDHNARR RKQPGSVHLN SRVSSSLYGT GIKLRLGLFS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-271792521184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234251KKKSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1271s0060.13.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464879.11e-157squamosa promoter-binding-like protein 2 isoform X2
RefseqXP_024464888.11e-157squamosa promoter-binding-like protein 2 isoform X3
SwissprotQ9S8401e-64SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLB9GMK31e-155B9GMK3_POPTR; SBP family protein
STRINGPOPTR_0001s13890.11e-156(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.33e-62squamosa promoter binding protein-like 2