PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1260s0050.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 244aa MW: 27663.9 Da PI: 6.1548 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.3 | 5.5e-18 | 30 | 82 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k SapurV1A.1260s0050.2.p 30 KKRLNLEQVKALEKSFEVGNKLEPERKLQLAKALGLQPRQIAIWFQNRRARWK 82 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.3 | 1.5e-41 | 28 | 119 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 ekk+rl+ eqvk+LE+sFe +kLeperK +la++Lglqprq+a+WFqnrRAR+ktkqlEkdye Lk+++d+lk++n++L++++++L SapurV1A.1260s0050.2.p 28 EKKKRLNLEQVKALEKSFEVGNKLEPERKLQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYEILKKQFDSLKADNDALQAQNKKL 114 69************************************************************************************* PP HD-ZIP_I/II 88 reelk 92 ++el SapurV1A.1260s0050.2.p 115 HAELL 119 *9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.65E-19 | 21 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.892 | 24 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-17 | 27 | 88 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.48E-15 | 29 | 85 | No hit | No description |
Pfam | PF00046 | 2.8E-15 | 30 | 82 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-19 | 32 | 91 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 55 | 64 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 59 | 82 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 64 | 80 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.4E-15 | 84 | 122 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSFSGMEKCE EVGNGEDDLS DDGSQIGEKK KRLNLEQVKA LEKSFEVGNK LEPERKLQLA 60 KALGLQPRQI AIWFQNRRAR WKTKQLEKDY EILKKQFDSL KADNDALQAQ NKKLHAELLS 120 LKIRESNEVN LKKETEGSWS NGSENSCDVN IDISRNPVAS SPVSSHLTTK HLFSTSIRPA 180 SITQLLQGSS RSDLQCLKVD QLVHQDENFC SMFNGMEEQQ GFWSWPEQQN ATFSLNQVQF 240 SNN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 84 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1260s0050.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024444562.1 | 1e-169 | homeobox-leucine zipper protein ATHB-13 isoform X2 | ||||
Swissprot | Q8LC03 | 9e-76 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A3N7G4G7 | 1e-168 | A0A3N7G4G7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s11800.1 | 1e-167 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 4e-78 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1260s0050.2.p |
Publications ? help Back to Top | |||
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