PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1259s0030.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 459aa MW: 51245.1 Da PI: 7.0262 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 111.9 | 7.2e-35 | 48 | 190 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 lp+G++F+Ptd+el+ e+L++kve+k + + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r SapurV1A.1259s0030.2.p 48 LPAGVKFDPTDQELI-EHLEAKVEAKGmrshplI---DefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRR 129 799************.99********95554442...143333666646**********.555666799****************** PP NAM 77 atk........sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +++ + +W++tgk+++v++ g+++g+kk+Lv+y g+++++ekt+Wvmh+y+l SapurV1A.1259s0030.2.p 130 KIQtecdlqggETRWHKTGKTRPVMV-IGKQKGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 190 73334555544778************.8999**********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-37 | 44 | 209 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.974 | 48 | 209 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-16 | 49 | 190 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MMSTKCGMAS ISSSDLIDAK LEEHQLCGSK QCPGCGHKLE GKPDWLGLPA GVKFDPTDQE 60 LIEHLEAKVE AKGMRSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA 120 YTTGTRKRRK IQTECDLQGG ETRWHKTGKT RPVMVIGKQK GCKKILVLYT NFGKNRRPEK 180 TNWVMHQYHL GQNEEEKEGE LVVSKIFYQT QPRQCGYTDR GATAGEGGSD ANRRRDSGSG 240 SCSSKEIILH RDEISGTGTV ASSITTTYTA MDIQQLNSDH FGFAPFRKGF DEVGIGEASV 300 AREASASGTC DEVREHNQRP HHVAAYDFHH QQPQQHHYHH HQTAHHQTAP TAFHIGTPSH 360 PFSTMISPPP LNHSIILDED PYHVSRIILQ NEIQQQQQQQ QQHKLGGRAA SGLEELIMGC 420 TSNHVKGDSS MANPQQEPDQ WLKYSPFWPD PGDQDHHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-12 | 46 | 190 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1259s0030.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB970795 | 0.0 | AB970795.1 Populus tremula x Populus tremuloides PtxtNAC128 mRNA for NAC transcriptional factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006371968.1 | 0.0 | NAC domain-containing protein 75 | ||||
Refseq | XP_024445495.1 | 0.0 | NAC domain-containing protein 75 | ||||
Swissprot | Q9M0F8 | 1e-171 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | B9N5H6 | 0.0 | B9N5H6_POPTR; NAC family protein | ||||
STRING | POPTR_0018s06790.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-168 | NAC domain containing protein 75 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1259s0030.2.p |
Publications ? help Back to Top | |||
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