PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1250s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 428aa    MW: 47799.6 Da    PI: 5.8059
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1250s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.96.9e-1764151297
                             EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                      B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                             +k ++ps+v+   +l l +kf+++h ++  e++t+ le e g+s+  k+  rk++    l++GW+ F+ +++Lk gD+vvF+l++ +
  SapurV1A.1250s0040.1.p  64 IKHMVPSNVTGGFCLNLGRKFCDAHLQE--EDTTIFLEGEGGKSYPTKYLARKSG----LSGGWRCFAIDHNLKGGDIVVFHLVNPT 144
                             6899********************9533..678****************666666....9**********************98766 PP

                             EE..EEEEE CS
                      B3  89 efelvvkvf 97 
                             +f  +v + 
  SapurV1A.1250s0040.1.p 145 TF--KVYIA 151
                             66..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-1957153IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-2258154IPR015300DNA-binding pseudobarrel domain
CDDcd100179.18E-2361152No hitNo description
PROSITE profilePS5086311.63263154IPR003340B3 DNA binding domain
SMARTSM010191.1E-1663154IPR003340B3 DNA binding domain
PfamPF023623.1E-1464152IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MAMVVEANVH QLVPYDVSMK SESHKRRRDS SADQYANCEE DKADAMIRAK DIQANLAPEF  60
PSIIKHMVPS NVTGGFCLNL GRKFCDAHLQ EEDTTIFLEG EGGKSYPTKY LARKSGLSGG  120
WRCFAIDHNL KGGDIVVFHL VNPTTFKVYI ARVNSSQNEN GALGLLKLEA CVKPMNCISD  180
AVHVESLSKG GEEMKNQVLK PLLLDNPEEN SEKNMVIHVT DLGTRSVHSE NESEDLGFEI  240
TDGIRLSESV VDFKEVKSFN DFDILVNGLV INCELSKRLQ IKYYELCCSQ KSFLHEHLLD  300
GLNCKLVAGM LAETINIADA IRASKLTTSQ NDFATWENTL KSFQGLGMNV GFLLARLGRL  360
VTLSDKSKRV KVATLERVNA EMERRSLEAK LLEVKETMNR LDFEIETLEM NSENLGRVFE  420
KMATAHW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1250s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464278.11e-177B3 domain-containing protein Os01g0234100
TrEMBLB9HRZ51e-180B9HRZ5_POPTR; Uncharacterized protein
STRINGPOPTR_0009s10610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-32B3 family protein