PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1243s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 285aa    MW: 30504.2 Da    PI: 4.4555
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1243s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00074258281123
                             EEETTTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                             ++C+ C +sF +   Lk+H +  H
  SapurV1A.1243s0060.1.p 258 FSCKSCERSFGSDGALKSHSQAkH 281
                             89*****************76655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030661.2E-66165No hitNo description
PROSITE profilePS5015710.596258284IPR007087Zinc finger, C2H2
PROSITE patternPS000280260281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSSMEFWGVE VKAGEPLKVE PKDFYMIHLS QAALGESSKK GNDSVPLFLK FDEKKLVLGT  60
LSPENIPQLS FDLVFEREFE LSHNWKNGSV FFCGYQAAIP ENDSDFSDDG EEIPFEKVEN  120
VRLAPGTGKA AKPEKPKATP AASSKDDDSD EDDDSDDDDD SDEDDTDNGS DVEGMSLEGG  180
SDDESDSEDE ETPKKAEKSK KRTSDSAIKT PVPSKKAKNA TPQKTDGGKA GQVTPHPSKA  240
KAAANGNNPK TPKSGGSFSC KSCERSFGSD GALKSHSQAK HGSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1243s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1446810.0EF144681.1 Populus trichocarpa clone WS01116_O05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384671.11e-150histone deacetylase HDT1
TrEMBLA9P9501e-149A9P950_POPTR; C2H2 family protein
STRINGPOPTR_0004s20020.11e-150(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.23e-35histone deacetylase 3