PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1240s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WOX
Protein Properties Length: 249aa    MW: 28054 Da    PI: 5.5937
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1240s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.91.3e-21104164257
                             T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                             r+R+t+t+ ql++Le+ F + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  SapurV1A.1240s0080.1.p 104 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 164
                             89*****************99**************************************97 PP
2Wus_type_Homeobox102.23.6e-33103166265
       Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                             ar+RWtPtp Q++iLe+++++G  tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
  SapurV1A.1240s0080.1.p 103 ARQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 166
                             789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-1898168IPR009057Homeodomain-like
PROSITE profilePS5007115.175100165IPR001356Homeobox domain
SMARTSM003894.9E-15102169IPR001356Homeobox domain
SuperFamilySSF466899.41E-19103166IPR009057Homeodomain-like
PfamPF000462.0E-19104164IPR001356Homeobox domain
CDDcd000861.53E-14104166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDWDNNQENH QDSHQNQREC RNGINGTNVS VNGNGGTNML YVKVMTDEQL ETLRKQIAVY  60
AAICEQLVEM HKTLSAQQDL AGGRLGNLYC DPLMTSGGHK ITARQRWTPT PVQLQILERI  120
FDQGNGTPSK QKIKEITSEL SQHGQISETN VYNWFQNRRA RSKRKQLVSS SNNAESEVET  180
EVDSLNEKKK PEIFHTQQNP PRAEDLCFQS PEISSELHYL GDDHLTGKMG VPGNYNLYDQ  240
AEDYGMAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157165RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1240s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9827120.0KF982712.1 Populus tomentosa WOX13a (WOX13a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306432.11e-174WUSCHEL-related homeobox 13 isoform X2
RefseqXP_011022183.11e-174PREDICTED: WUSCHEL-related homeobox 13
SwissprotO817881e-104WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLW8P7H80.0W8P7H8_POPTO; WOX13a
STRINGPOPTR_0005s10480.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-100WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]