PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1221s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARR-B
Protein Properties Length: 458aa    MW: 51377.8 Da    PI: 5.1977
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1221s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.99.6e-23205258155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             kp+l+Wt+eLH+ F++a++ L G + A Pk+il++m+v+gL  e+v SHLQkYRl
  SapurV1A.1221s0120.1.p 205 KPKLVWTNELHNIFLQALRIL-GVDGAHPKKILQHMNVPGLKKENVSSHLQKYRL 258
                             79*******************.********************************8 PP
2Response_reg56.12.1e-19251301106
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                             +l+v+ +p+ ++++ ++l+  gy ev++a+ +++a+++l+ek+  ++lil+   +p+md +e+l++  e + + pi+v++a ++e++
  SapurV1A.1221s0120.1.p  25 ILVVESDPTCLRIVSKMLQVFGY-EVKTATRATDAMHILREKEdeINLILTETHLPDMDQYEILETVGELS-SSPIVVFSADNNEST 109
                             89*********************.***************888778**********************9998.9************** PP

                             HHHHHHTTESEEEESS--HHH CS
            Response_reg  86 alealkaGakdflsKpfdpee 106
                             +l +l  Ga+ +l+Kp+ +++
  SapurV1A.1221s0120.1.p 110 ILGCLFKGAELYLVKPVIKND 130
                             ****************87665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.6E-2623142No hitNo description
SMARTSM004484.4E-1623135IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521726.26E-2323140IPR011006CheY-like superfamily
PROSITE profilePS5011029.73324139IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.3E-1525132IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.03E-1626126No hitNo description
Gene3DG3DSA:1.10.10.602.2E-24202262IPR009057Homeodomain-like
SuperFamilySSF466891.13E-17202262IPR009057Homeodomain-like
PROSITE profilePS512949.959202261IPR017930Myb domain
TIGRFAMsTIGR015574.4E-20205258IPR006447Myb domain, plants
PfamPF002493.0E-6208257IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MTCEQVLSVD VTENNAGSFP IGVRILVVES DPTCLRIVSK MLQVFGYEVK TATRATDAMH  60
ILREKEDEIN LILTETHLPD MDQYEILETV GELSSSPIVV FSADNNESTI LGCLFKGAEL  120
YLVKPVIKND VKNLWQLTYR TKLKTAVSGE GSNTFHGGSA EQNTSSLTVG NPSSTMGMTD  180
QKGKRKELEE TDNDHEYINL TAPKKPKLVW TNELHNIFLQ ALRILGVDGA HPKKILQHMN  240
VPGLKKENVS SHLQKYRLYL KREQDGMQKT MIEDCNPSST FNPQGGFSQY TNSQFFMTAS  300
QSEYRNNFQN NLCRPMSVHS LGFVHSPTHV NSNYNGILIP NYVQVDSQSK QLYPSYPNSN  360
HTEIITTTDG SFSSFDQKGK YSVDKHLNQG TTLSNTGTHG PTFLGNSQQQ VQFPLPQPQP  420
LPEKEDESEI LDIATMEELE LLAMEKEFLE DLKNDLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17201262162ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1221s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834263e-81AC183426.2 Populus trichocarpa clone Pop1-45L17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035453.10.0PREDICTED: two-component response regulator ARR14-like
TrEMBLA0A3N7FY220.0A0A3N7FY22_POPTR; Uncharacterized protein
STRINGPOPTR_0014s07320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145541114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.14e-57response regulator 2