PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1211s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 353aa    MW: 39674.5 Da    PI: 6.3181
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1211s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3104.46.1e-33120222199
                             EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                             f+k ltpsdv+k++rlv+pk++ae++    g++  ++  l++edesgr W+++++y+++s++yvltkGW+++vk+++L++gD+v+F+
  SapurV1A.1211s0020.1.p 120 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsGNSVDKGLLLSFEDESGRYWKFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDVVLFE 206
                             99***************************966667889************************************************* PP

                             E-SSSEE..EEEEE-S CS
                      B3  84 ldgrsefelvvkvfrk 99 
                             ++++++ +l+++++r+
  SapurV1A.1211s0020.1.p 207 RHRTDGDRLFIGWRRR 222
                             98889999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-41115226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.59E-31116221IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-28118212No hitNo description
PfamPF023625.4E-30120222IPR003340B3 DNA binding domain
PROSITE profilePS5086314.48120223IPR003340B3 DNA binding domain
SMARTSM010196.8E-26120223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSINHFSTDL QETLSWWARQ HQQPVMEPNP NASFSTPNKP PNISNPNSYW PPYHHQHHSW  60
LNPYNPAQQT SSMFPPQNPT LNFNLNDEDD EDQDREQQQQ NETQQEQKQE ILVLDKEPMF  120
EKPLTPSDVG KLNRLVIPKQ HAEKYFPLSG NSVDKGLLLS FEDESGRYWK FRYSYWNSSQ  180
SYVLTKGWSR YVKEKQLDAG DVVLFERHRT DGDRLFIGWR RRGAGSNSGV MAQGSGSGVW  240
SRGIYSPSSS SSGPYHLSSS DTQHGLGADV PYQPDCLHPG SIAQDQAAPL GNSKRVRLFG  300
VNLECQLDGS EPSTPDSSSL SSLQGPGHPQ FYSQPSYSSN SARGQMVSHM TL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-491152223113B3 domain-containing transcription factor NGA1
5os9_B3e-491152223113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1211s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166720.0AC216672.1 Populus trichocarpa clone POP018-I12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046920.10.0PREDICTED: B3 domain-containing protein At2g36080 isoform X1
RefseqXP_011046923.10.0PREDICTED: B3 domain-containing protein At2g36080 isoform X3
SwissprotQ8GYJ28e-70Y2608_ARATH; B3 domain-containing protein At2g36080
SwissprotQ9FNI31e-69Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLU5GBS20.0U5GBS2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s22460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.22e-67B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]