PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1209s0040.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NF-YA | ||||||||
Protein Properties | Length: 307aa MW: 33065.4 Da PI: 9.3824 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 93 | 3.5e-29 | 152 | 207 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++I++RR++Rak++ e+kl ++rkpy+h SRh +A+rRpRg+gGrF SapurV1A.1209s0040.2.p 152 VPIYVNAKQYHGIIRRRKSRAKAAMENKL-PRNRKPYMHRSRHLQAMRRPRGCGGRF 207 59***************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.4E-32 | 149 | 210 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.869 | 150 | 210 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 9.8E-26 | 153 | 207 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.3E-21 | 153 | 175 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.3E-21 | 184 | 207 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MAMKTFYVKD HEGSVHNPIG QLSTVPWWTA IGSQAVNGES CGLLKALPIE QPVGGGETAT 60 MHARMGAEQG LDKGNINQFT IFPGGGQKSV QGGISLQTAL PEYCAHFELG FGQPVICAKY 120 PSVDQCYGVF STFGSQISGR IMLPMSMSTE DVPIYVNAKQ YHGIIRRRKS RAKAAMENKL 180 PRNRKPYMHR SRHLQAMRRP RGCGGRFLNT KELNDAKGIT DAKKAGDFQL SQPTGSQNSE 240 VLESGGATLN SSMEANCGGS NLSGSEVTSM YSRVDFDRFP FNHHGSTVHG FSGMDGGHGI 300 AMPSSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 4e-17 | 151 | 221 | 2 | 71 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1209s0040.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210132 | 1e-146 | AC210132.1 Populus trichocarpa clone POP011-D09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006381938.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X1 | ||||
Refseq | XP_024459808.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X1 | ||||
TrEMBL | U5G8I2 | 0.0 | U5G8I2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s21640.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 4e-55 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1209s0040.2.p |