PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1209s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YA
Protein Properties Length: 307aa    MW: 33065.4 Da    PI: 9.3824
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1209s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA933.5e-29152207258
               CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                              p+YVNaKQy++I++RR++Rak++ e+kl  ++rkpy+h SRh +A+rRpRg+gGrF
  SapurV1A.1209s0040.1.p 152 VPIYVNAKQYHGIIRRRKSRAKAAMENKL-PRNRKPYMHRSRHLQAMRRPRGCGGRF 207
                             59***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-32149210IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.869150210IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.8E-26153207IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.3E-21153175IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.3E-21184207IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAMKTFYVKD HEGSVHNPIG QLSTVPWWTA IGSQAVNGES CGLLKALPIE QPVGGGETAT  60
MHARMGAEQG LDKGNINQFT IFPGGGQKSV QGGISLQTAL PEYCAHFELG FGQPVICAKY  120
PSVDQCYGVF STFGSQISGR IMLPMSMSTE DVPIYVNAKQ YHGIIRRRKS RAKAAMENKL  180
PRNRKPYMHR SRHLQAMRRP RGCGGRFLNT KELNDAKGIT DAKKAGDFQL SQPTGSQNSE  240
VLESGGATLN SSMEANCGGS NLSGSEVTSM YSRVDFDRFP FNHHGSTVHG FSGMDGGHGI  300
AMPSSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-17151221271NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1209s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2101321e-146AC210132.1 Populus trichocarpa clone POP011-D09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381938.10.0nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_024459808.10.0nuclear transcription factor Y subunit A-10 isoform X1
TrEMBLU5G8I20.0U5G8I2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s21640.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.24e-55nuclear factor Y, subunit A10