PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1172s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CAMTA
Protein Properties Length: 963aa    MW: 107580 Da    PI: 5.4389
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1172s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1172.84.7e-54121263116
                    CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs 88 
                             +e ++rwlk+ e++ iLen +k+++t+e++++p+sgsl+L+n++++++frkDG++w+kkkdg++v E+he+LKvg+ve+l+cyYah+
  SapurV1A.1172s0010.1.p  12 EEaQTRWLKPAEVVFILENQDKYQFTEESPQKPTSGSLFLFNKRVLKFFRKDGHNWRKKKDGRSVGEAHERLKVGNVEALNCYYAHG 98 
                             55599********************************************************************************** PP

                    CG-1  89 eenptfqrrcywlLeeelekivlvhyle 116
                             e+n++fqrr+yw+L++++e+ivlvhy++
  SapurV1A.1172s0010.1.p  99 EQNQNFQRRSYWMLDRAFEHIVLVHYRD 126
                             **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.3237133IPR005559CG-1 DNA-binding domain
SMARTSM010762.6E-7110128IPR005559CG-1 DNA-binding domain
PfamPF038593.9E-4713126IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.6E-10396486IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.24E-18401485IPR014756Immunoglobulin E-set
PfamPF018332.4E-9401484IPR002909IPT domain
CDDcd001021.27E-6401485No hitNo description
Gene3DG3DSA:1.25.40.205.6E-15597691IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.733599691IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.0E-16602693IPR020683Ankyrin repeat-containing domain
CDDcd002041.15E-13619691No hitNo description
PfamPF127965.4E-7620692IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.22632664IPR002110Ankyrin repeat
SMARTSM002480.0032632661IPR002110Ankyrin repeat
SMARTSM002482300671700IPR002110Ankyrin repeat
SMARTSM0001519749771IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.62750779IPR000048IQ motif, EF-hand binding site
SMARTSM000150.13804826IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.419805832IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.04E-5805856IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0028807825IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0074827849IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.712828852IPR000048IQ motif, EF-hand binding site
PfamPF006120.0014830848IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 963 aa     Download sequence    Send to blast
MEPGYDINDL FEEAQTRWLK PAEVVFILEN QDKYQFTEES PQKPTSGSLF LFNKRVLKFF  60
RKDGHNWRKK KDGRSVGEAH ERLKVGNVEA LNCYYAHGEQ NQNFQRRSYW MLDRAFEHIV  120
LVHYRDITEG KPSPGSAAQL SPILSCSPDN NTSQTRGSTS AVSGVYEPYQ SFSSPASVDV  180
SSGLGIKDNG VDRTAEFTSS DNNEVTQFLR RLEEQLSLNA DSANEIGPFG GEEGAINDTK  240
FLEYINNISK EDHSKNLLHG SQYIADYQSY GGLAEKQLER NNLAPFRDAD GSKEPLPWNE  300
VIESYKTSSC TEYQPKSSLS TEPAQEQENF YWINCNEPDV RNSSLLLPEE AENFELPAYS  360
SVIETHENNS NYYAMLYDQG HLGMAIEADS NLTVAQQQKF TIYEISPEWG YATEATKVII  420
VGSFLCDPSE SSWMCMFGDT EVPLQIIQEG VIRCDSPPQQ PGKVTLCITS GNRESCSEIR  480
DFEYRAKNSS SAHCNLCQTE DTKSPEELLL LVRFVQMLLS DFSLQGGDRV EMGIHLLRKL  540
KADDDTWGYI IEALLVGSGT SSMTVDWLLQ QLLNDKLQQW LSSKSQEGHD QPGCSFSKKE  600
QGIIHMVAGL GFEWALSPIL SHGVSINFRD INGWTALHWA ARFGREKMVA SLLASGASAG  660
AVTDPSPQDP IGKTPASIAA TSGHMGLAGY LSEMALTSHL SSLRLEESEL SKGSAELQAE  720
RTLESVSKES FTDNEDQVSL KYTLAAARNA AQAAARIQSA FRAHSFRKRQ LREATSLDEY  780
GINGGDIQGL SSVSKLAFHG NSHVINSAAL CIQKKYRGWK GRRNFLALRQ KVVMIQAHVR  840
GYQIRKYYEI ICWAVGVLDK AVLRWRRKGI GLRGFKNPME SIDESEDEDF LKIFRKQKVD  900
GAIEEAVSRV LSMVKSPNAR LQYHRTLEQY RKAKAGLDGI SGAAASTFQV DGTEMEKDLY  960
HF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1172s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368871.10.0calmodulin-binding transcription activator 4 isoform X1
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLU5GPG60.0U5GPG6_POPTR; CAMTA family protein
STRINGPOPTR_0001s13700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]