PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1169s0070.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 453aa    MW: 50545.9 Da    PI: 9.0375
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1169s0070.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.3e-065577123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C++C++ F r  nL+ H r+H
  SapurV1A.1169s0070.2.p 55 YVCEICNQGFQRDQNLQMHRRRH 77
                            9*********************9 PP
2zf-C2H2163.4e-05132154123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C++C+k +  +s++k H++t+
  SapurV1A.1169s0070.2.p 132 WVCEKCSKGYAVQSDYKAHLKTC 154
                             58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.93E-55278No hitNo description
Gene3DG3DSA:3.30.160.601.8E-55477IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.975577IPR007087Zinc finger, C2H2
SMARTSM003550.00525577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
PROSITE patternPS01359057137IPR019786Zinc finger, PHD-type, conserved site
SMARTSM0035521096126IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-4123153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035560132159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MLANYSPSSL PCNSEPFSSL DNGNNINKRK RRPAGTPDAE VVSLSPKTLL ESDRYVCEIC  60
NQGFQRDQNL QMHRRRHKVP WKLLKRENPV VRKRVFVCPE PSCLHHDPCH ALGDLVGIKK  120
HFRRKHSSHK QWVCEKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC  180
NMGKLRSESQ SLQPPACLSR TASSPSPSSD TNFSTAPWLP LIIPRTKSDH ALFFTPTTTS  240
SAVDKSDSLK SAARYHNLEL QLSTSSRNPI EISVSPKRED NHSTQLQLSI GSSDVSERNE  300
SNISFTVKDH DGKSSPRENN NGSPRPELGA PRAKDQVREL LMVAMAEKIH AEEARKQANR  360
QIELAEQEFA NAKRIRQQAR AELDKAEGLK QHAIKQINST LLQITCHACQ QNFHARTQEE  420
ENSLVLSCLS SAVTEGEVGL INGIGIAKTF NR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-18130181556Zinc finger protein JACKDAW
5b3h_F4e-18130181556Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1169s0070.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1473590.0EF147359.1 Populus trichocarpa clone WS0122_O19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318320.10.0protein indeterminate-domain 16
SwissprotF4IPE31e-139IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLB9I4V80.0B9I4V8_POPTR; Uncharacterized protein
STRINGPOPTR_0012s03730.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-126C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]