PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1169s0060.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family BBR-BPC
Protein Properties Length: 287aa    MW: 31492 Da    PI: 9.5338
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1169s0060.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3045.4e-9312861301
               GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerdmaflqrdkalaernkalverdnkllall 85 
                             md+d+s + rn+gyyep+ ++k nlgl+lm+     ++     + + +++  + +++rd+   q+   +++  ++ +++++k+ ++l
  SapurV1A.1169s0060.2.p   1 MDEDNSLDiRNWGYYEPT-TVKGNLGLHLMAPTMPENSFSgSRSAAIMTSMYGGFHHRDVGVSQHMYSMDHTRDSSIDKREKFHHVL 86 
                             9****************9.9**********865544444414444447788899********99999**99999999********** PP

               GAGA_bind  86 lvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkse 172
                             + ++        + +vl++t+s++++q+     ++++  +  + e+le+ +    a ++ +++ ++k++++k+pk+ k  ++kk   
  SapurV1A.1169s0060.2.p  87 PGNHD-------YASVLPETSSAHHMQM-----FQPP--NSVNDETLEQVE---GAGVVAKENGPDKKKKKKRPKALKCLEAKKGMI 156
                             *8775.......78899***********.....3222..222334333333...344445555555566777777777777776555 PP

               GAGA_bind 173 kskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagr 258
                              +++ +   s   ++ ++ kk++++ +ng+s+D+s +P+PvCsCtG+++qCY+WG+GGWqSaCCtt iSv+PLP+s krrgaRiagr
  SapurV1A.1169s0060.2.p 157 GPQSPKPDGSPAaQQGRSAKKTVEIMINGISMDISLFPIPVCSCTGTPQQCYRWGCGGWQSACCTTCISVHPLPMSVKRRGARIAGR 243
                             4444333333334789*********************************************************************** PP

               GAGA_bind 259 KmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                             KmS gafkk+LekLa+eGyd+s ++DL++hWAkHGtnkfvti+
  SapurV1A.1169s0060.2.p 244 KMSLGAFKKVLEKLAGEGYDFSSAIDLRTHWAKHGTNKFVTIK 286
                             ******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062177.4E-1031286IPR010409GAGA-binding transcriptional activator
SMARTSM012262.5E-1721286IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDEDNSLDIR NWGYYEPTTV KGNLGLHLMA PTMPENSFSG SRSAAIMTSM YGGFHHRDVG  60
VSQHMYSMDH TRDSSIDKRE KFHHVLPGNH DYASVLPETS SAHHMQMFQP PNSVNDETLE  120
QVEGAGVVAK ENGPDKKKKK KRPKALKCLE AKKGMIGPQS PKPDGSPAAQ QGRSAKKTVE  180
IMINGISMDI SLFPIPVCSC TGTPQQCYRW GCGGWQSACC TTCISVHPLP MSVKRRGARI  240
AGRKMSLGAF KKVLEKLAGE GYDFSSAIDL RTHWAKHGTN KFVTIK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142DKKKKKKRP
2135141KKKKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1169s0060.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9822720.0FJ982272.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC11) gene, complete cds.
GenBankFJ9822730.0FJ982273.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318318.30.0protein BASIC PENTACYSTEINE2
RefseqXP_024437744.10.0protein BASIC PENTACYSTEINE2
RefseqXP_024437757.10.0protein BASIC PENTACYSTEINE2-like
RefseqXP_024437758.10.0protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD01e-81BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A2K1Y8J80.0A0A2K1Y8J8_POPTR; Uncharacterized protein
TrEMBLH1ZN550.0H1ZN55_POPTR; GAGA-binding transcriptional activator
STRINGPOPTR_0012s03750.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.33e-82basic pentacysteine 2