 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
SapurV1A.1169s0060.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 294aa MW: 32435.2 Da PI: 9.387 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.1169s0060.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 303.9 | 6e-93 | 8 | 293 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerdmaflqrdkalaernkalverdnkllall 85
md+d+s + rn+gyyep+ ++k nlgl+lm+ ++ + + +++ + +++rd+ q+ +++ ++ +++++k+ ++l
SapurV1A.1169s0060.1.p 8 MDEDNSLDiRNWGYYEPT-TVKGNLGLHLMAPTMPENSFSgSRSAAIMTSMYGGFHHRDVGVSQHMYSMDHTRDSSIDKREKFHHVL 93
9****************9.9**********865544444414444447788899********99999**99999999********** PP
GAGA_bind 86 lvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkse 172
+ ++ + +vl++t+s++++q+ ++++ + + e+le+ + a ++ +++ ++k++++k+pk+ k ++kk
SapurV1A.1169s0060.1.p 94 PGNHD-------YASVLPETSSAHHMQM-----FQPP--NSVNDETLEQVE---GAGVVAKENGPDKKKKKKRPKALKCLEAKKGMI 163
*8775.......78899***********.....3222..222334333333...344445555555566777777777777776555 PP
GAGA_bind 173 kskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagr 258
+++ + s ++ ++ kk++++ +ng+s+D+s +P+PvCsCtG+++qCY+WG+GGWqSaCCtt iSv+PLP+s krrgaRiagr
SapurV1A.1169s0060.1.p 164 GPQSPKPDGSPAaQQGRSAKKTVEIMINGISMDISLFPIPVCSCTGTPQQCYRWGCGGWQSACCTTCISVHPLPMSVKRRGARIAGR 250
4444333333334789*********************************************************************** PP
GAGA_bind 259 KmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
KmS gafkk+LekLa+eGyd+s ++DL++hWAkHGtnkfvti+
SapurV1A.1169s0060.1.p 251 KMSLGAFKKVLEKLAGEGYDFSSAIDLRTHWAKHGTNKFVTIK 293
******************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MFFQFEIMDE DNSLDIRNWG YYEPTTVKGN LGLHLMAPTM PENSFSGSRS AAIMTSMYGG 60
FHHRDVGVSQ HMYSMDHTRD SSIDKREKFH HVLPGNHDYA SVLPETSSAH HMQMFQPPNS 120
VNDETLEQVE GAGVVAKENG PDKKKKKKRP KALKCLEAKK GMIGPQSPKP DGSPAAQQGR 180
SAKKTVEIMI NGISMDISLF PIPVCSCTGT PQQCYRWGCG GWQSACCTTC ISVHPLPMSV 240
KRRGARIAGR KMSLGAFKKV LEKLAGEGYD FSSAIDLRTH WAKHGTNKFV TIK*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 141 | 149 | DKKKKKKRP |
| 2 | 142 | 148 | KKKKKKR |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982272 | 0.0 | FJ982272.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC11) gene, complete cds. |
| GenBank | FJ982273 | 0.0 | FJ982273.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC11) mRNA, complete cds. |
