PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1169s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ZF-HD | ||||||||
Protein Properties | Length: 183aa MW: 20526.6 Da PI: 6.3928 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 89.7 | 2.7e-28 | 9 | 60 | 5 | 59 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 YkeCl+NhAaslG++a+DGCgEf+ + ++++++l+CaACgCHRnFHR+ +++ SapurV1A.1169s0050.1.p 9 LYKECLRNHAASLGSYATDGCGEFTLD---DASPSTLQCAACGCHRNFHRKVSHS 60 7*************************8...6689*****************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.1E-24 | 9 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-17 | 10 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.183 | 10 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.6E-24 | 10 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.91E-16 | 97 | 164 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-29 | 98 | 165 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 8.2E-31 | 106 | 164 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MESDDANDLY KECLRNHAAS LGSYATDGCG EFTLDDASPS TLQCAACGCH RNFHRKVSHS 60 NRWDRVMHPP SSETVVMETI DYAEGDNERD SRPPVMVAES GERSGKKRFR TKFTAEQREK 120 MMEFAEKLGW KLQRRDEDDE VERFCNGIGV SRQVFKVWMH NHKNSSSASS PSPGNASSLT 180 SQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-23 | 107 | 169 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1169s0050.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318316.3 | 1e-120 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9SB61 | 3e-42 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A2K1Y8K4 | 1e-119 | A0A2K1Y8K4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s03770.1 | 1e-119 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7982 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 3e-43 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1169s0050.1.p |
Publications ? help Back to Top | |||
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