PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1157s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HB-other | ||||||||
Protein Properties | Length: 310aa MW: 35146.6 Da PI: 4.712 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.8 | 4.3e-09 | 252 | 285 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp+++++ LA+++gL+++q+ +WF N+R ++ SapurV1A.1157s0010.1.p 252 WPYPTESDKIALAASTGLDQKQINNWFINQRKRH 285 58*****************************885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.0E-19 | 67 | 111 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.3E-19 | 69 | 110 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.3E-25 | 117 | 168 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.8E-24 | 122 | 167 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.097 | 205 | 225 | IPR005539 | ELK domain |
Pfam | PF03789 | 6.4E-5 | 205 | 226 | IPR005539 | ELK domain |
SMART | SM01188 | 3.9E-4 | 205 | 226 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.357 | 225 | 288 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-19 | 226 | 297 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.9E-12 | 227 | 292 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 230 | 289 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.02E-11 | 237 | 289 | No hit | No description |
Pfam | PF05920 | 6.2E-17 | 245 | 284 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 263 | 286 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MDGTYGLHSA VAGYSDKELM SPENLILQSE YQSLLSSEAF RLRTPILGSE EVLSEMASIR 60 TEEDMSTLIK AKIASHPCYP RLLEVYIDCQ KVGAPPGIAC FLDEIRREND LFKQDAVSTY 120 WGADPELDEF METYCELLVK YKSDLERPFD EATTFLNKIE MQLRNLCTGA SIRSLSDEGA 180 PSSDEELSGG ELDVHEAQPS GEDRELKDKL FRRFGGHIGT LKLELSKKKK KGKLPKEARQ 240 TLLGWWDVHY KWPYPTESDK IALAASTGLD QKQINNWFIN QRKRHWKPSE NLQFGVVDSL 300 SGQYFTEDD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1157s0010.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002315682.3 | 0.0 | homeobox protein knotted-1-like 6 | ||||
Swissprot | Q84JS6 | 1e-138 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | A0A2K1YNT5 | 0.0 | A0A2K1YNT5_POPTR; Uncharacterized protein | ||||
STRING | Lus10013037 | 1e-160 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF620 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 1e-125 | KNOTTED1-like homeobox gene 6 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1157s0010.1.p |
Publications ? help Back to Top | |||
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