PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1120s0060.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 330aa MW: 36491.7 Da PI: 5.7862 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 265 | 287 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+k+F + L H r+H SapurV1A.1120s0060.1.p 265 FECPYCSKVFGSGQALGGHKRSH 287 89**************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 5.2E-7 | 3 | 28 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.787 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.40.10 | 2.2E-4 | 208 | 276 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57667 | 3.81E-7 | 222 | 287 | No hit | No description |
SMART | SM00355 | 53 | 222 | 242 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.058 | 222 | 252 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.013 | 222 | 242 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.284 | 265 | 287 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.024 | 265 | 287 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.9E-13 | 265 | 288 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 267 | 287 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MERHKCKLCI RTFPNGRALG GHMKAHLAAT RQQLGGLDRT ESFSSSYSSS SGEEEVKEEQ 60 EIVKNREMAE EKSLAYGLRE NPKKSFRLAD PEFSFAADTA GSVVVQDRES ETESRNPTRR 120 RSKRIRFGDN QKQDFDANKA ADLKNPSWVE SSSPAEPEPV SSVSDTSPEE DVARCLMMLS 180 RDVWMRNIED DYEEQVGKDG EKSVEMLQEA EEIKVSKIRG KFRCEKCMKL FRSSKALSGH 240 KRICSLNATE VRKFAGSADA NDRIFECPYC SKVFGSGQAL GGHKRSHLIG SATSTSGVAE 300 ASAKLETSLI DLNLPAPVED DEFSVVSDA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1120s0060.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024452722.1 | 0.0 | zinc finger protein ZAT9 | ||||
TrEMBL | A0A2I4KL00 | 0.0 | A0A2I4KL00_POPTR; C2H2 family protein | ||||
STRING | POPTR_0001s15790.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 4e-44 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1120s0060.1.p |