PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1111s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ERF | ||||||||
Protein Properties | Length: 327aa MW: 36465.9 Da PI: 6.0806 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.2e-20 | 127 | 177 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp ++rkr++lg+f+taeeAa +++a+ +l+g SapurV1A.1111s0070.1.p 127 KKFRGVRQRP-WGKWAAEIRDP---NRRKRVWLGTFDTAEEAATVYDRAAVRLKG 177 59********.**********8...335************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.22E-33 | 127 | 187 | No hit | No description |
PROSITE profile | PS51032 | 23.828 | 128 | 185 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-36 | 128 | 191 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-13 | 128 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-22 | 128 | 186 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-30 | 128 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-11 | 129 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-11 | 151 | 167 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MRLLSPHELQ PILISNPTMC VQPKVRITKH VLAKNQQLHP SSRTRQRLVR IIHTDPDATD 60 SSSDEEEEEQ ERKFVKIVKR QVSEISFLEQ DTTAPAAPSS ATSNDDQKPR RKRPSSRLPV 120 PDVSRQKKFR GVRQRPWGKW AAEIRDPNRR KRVWLGTFDT AEEAATVYDR AAVRLKGPDA 180 VTNFRTSTAT AERANFNSGS NDVKCESFDS PSSRGTGTVL ASPTLVPRQV ELTPFDLVLT 240 EKAQVADGQR ESCESSLSGA NDMSSPTSVL HYDEFTLFDS LGYCDVDAFG FEIDVPLSLP 300 NSMLSGKFFG KEEFVDLDDF LVDAMC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-21 | 124 | 192 | 1 | 70 | ATERF1 |
3gcc_A | 9e-21 | 124 | 192 | 1 | 70 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1111s0070.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011011769.1 | 0.0 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | B9I767 | 0.0 | B9I767_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s15440.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5585 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 8e-34 | cytokinin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1111s0070.1.p |