PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1081s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 628aa    MW: 70485.4 Da    PI: 5.3617
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1081s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.42.4e-1302456121374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             lv+ L++c+e ++ ++++ +++l+a+l elasp+g+p+ Rla+yfteALa r++r +++++++ +p+e + +  +++ +al+l+++v
  SapurV1A.1081s0090.1.p 245 LVRFLTACVEEIRLNNFAGINHLIAKLGELASPKGTPISRLASYFTEALALRVTRIWPHIFHITTPRELD-RVDDDSGTALRLLNQV 330
                             5788**************************************************************9998.5678888999****** PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                             sPi+kf h+taN+++l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fAe+l++
  SapurV1A.1081s0090.1.p 331 SPIPKFIHFTANEMLLRAFEGKDRVHIIDFDIKQGLQWPCLFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLAGFAEALNL 413
                             **************************************************************....********************* PP

                    GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                             pfef++ v++rled++l++L+vk++E++a+n+++q+h++l +    +   +++L l++s++P++v ++eqea+hn++++ +r++++l
  SapurV1A.1081s0090.1.p 414 PFEFHP-VVDRLEDVRLWMLHVKERECVAINCIFQMHKTLYDGSGGA--LRDFLGLIRSTNPTIVLMAEQEAEHNGPNLETRVCNSL 497
                             ******.7*******************************95543333..589*********************************** PP

                    GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348
                             +yysa+fds++++lp +   rik+E++  +rei+n+vaceg+er erhe++ kW++ +e+ G++ + ++e+++ q ++ll++++ d 
  SapurV1A.1081s0090.1.p 498 KYYSAIFDSIDSSLPLDRPVRIKLEEM-YAREIRNIVACEGSERHERHESFDKWKKLMEQGGLRCAGIDEREMLQTQMLLKMYSCDS 583
                             ***************************.89******************************************************999 PP

                    GRAS 349 yrveee...sgslvlgWkdrpLvsvSaWr 374
                             y+v+++   +++l+l W d+pL++vSaW+
  SapurV1A.1081s0090.1.p 584 YEVQKQgneEAALTLSWLDQPLYTVSAWT 612
                             ****6544388899**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.938219589IPR005202Transcription factor GRAS
PfamPF035148.2E-128245612IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE SAAQFQACHF QLPSMSTQRL DLPCTFSRKE SSRSQPMRPV  60
GVGLSVDKSL ESKTSSCSLM QNIRLPPLAT SNQSVKDEFW EKGKNLKRFA EQSVDESYIN  120
RAKRKKGNNE NGKSDDFCEG DEERVYFVPS EVISPPLPLS NNPWVDSVIT EIAELGEKDG  180
ESSQRPVKEA SGSSTSSESQ SLDLRLSENV VEQEVGNGSS NPPHPQEGAV EAAEDDQREH  240
KGFELVRFLT ACVEEIRLNN FAGINHLIAK LGELASPKGT PISRLASYFT EALALRVTRI  300
WPHIFHITTP RELDRVDDDS GTALRLLNQV SPIPKFIHFT ANEMLLRAFE GKDRVHIIDF  360
DIKQGLQWPC LFQSLASRTN PPSHVRITGI GESKQELNET GDRLAGFAEA LNLPFEFHPV  420
VDRLEDVRLW MLHVKERECV AINCIFQMHK TLYDGSGGAL RDFLGLIRST NPTIVLMAEQ  480
EAEHNGPNLE TRVCNSLKYY SAIFDSIDSS LPLDRPVRIK LEEMYAREIR NIVACEGSER  540
HERHESFDKW KKLMEQGGLR CAGIDEREML QTQMLLKMYS CDSYEVQKQG NEEAALTLSW  600
LDQPLYTVSA WTPSDIAGSS TSFFQTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-7125261326380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1081s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303565.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLB9GW730.0B9GW73_POPTR; GRAS family protein
STRINGPOPTR_0003s12240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein