PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1073s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TCP | ||||||||
Protein Properties | Length: 417aa MW: 46240.1 Da PI: 7.2392 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.2 | 4.3e-36 | 87 | 198 | 2 | 108 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnss 86 ag+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i+ l+++ +++a++ +a++++++++ ss SapurV1A.1073s0050.1.p 87 AGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNSIDMLAELppWQPPANNINANMEENQNAGSS 173 89**************************************************************99888888887777777777666 PP TCP 87 sg...kaaksaakskksqksaasal 108 + ++ +s+ s + + + + ++ SapurV1A.1073s0050.1.p 174 EMgiaEEPESSGYSFQLHGQLTDHH 198 6656522222223333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.0E-32 | 88 | 191 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.887 | 89 | 147 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MQRIERKKYH PTEKHSLGIH SLSKHPQLLQ NQQQHGEAIN SNQTEGVPNK QSLHQTTGYA 60 KYRRRPEMKS TGGEIIQVQG GQIVRSAGRK DRHSKVYTAK GPRDRRVRLS AHTAIQFYDV 120 QDRLGYDRPS KAVDWLIKKA KNSIDMLAEL PPWQPPANNI NANMEENQNA GSSEMGIAEE 180 PESSGYSFQL HGQLTDHHNP GNDSSFLEQT IDPDAIPDTM RSFFPTCSTN SSMSFESYPT 240 VISRTANHSE DLGLSLHSFQ DQVLLHGQSQ AVTAQTPSTD QNLFEGSAPV GFDANFQRMM 300 AWSNDTNADN RVAGGFTSSP PLLTPHQAML AQGSAFSQRG PLQSSFPISI RAWNDLHMAS 360 IEHHRTQELH QSLIFSSRFA PEGLTGFSIP ARIHGENDQN VVSDRRPPSS SPNSQS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-21 | 94 | 147 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-21 | 94 | 147 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1073s0050.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006376360.1 | 0.0 | transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 1e-68 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A385JIR9 | 0.0 | A0A385JIR9_POPTO; TCP family transcription factor 4 | ||||
TrEMBL | B9MW22 | 0.0 | B9MW22_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s12370.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 7e-62 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1073s0050.1.p |