PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1070s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 850aa MW: 97511 Da PI: 6.1332

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1070s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.2	2.6e-18	62	137	3	78
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwev 78 Yn+YAk+vGFsvrk+ ++sk +g +++r+f+Cskeg+r+ +k++ + +++r+etrtgC a++ v+++ ++ +v SapurV1A.1070s0010.1.p 62 YNKYAKTVGFSVRKDWVNRSKVHGLVVSRKFTCSKEGYRRIDKRD-LNMKKHRKETRTGCLAHMIVTRQPyGKEIHV 137 9***************************************999.99999**************9985555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-15	62	133	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-27	243	337	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.644	523	559	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence Send to blast
MVIGLQMSDN LDLSLDEDCS SLSFALVNSS QFSNSSKDGV HRGGVLKIGT EFESDEHAYI 60 SYNKYAKTVG FSVRKDWVNR SKVHGLVVSR KFTCSKEGYR RIDKRDLNMK KHRKETRTGC 120 LAHMIVTRQP YGKEIHVDQA AEGELPSKSG TESSSTFELK NRQFEGWQSL DYLAMDFDNS 180 LQSERIRDMK EGEAGRLLRY FQRQHIENPS FIHSIQVDID DKVRNLFWAD DKMVVDYDHF 240 GDVVCLDTSY RMNKDLQPFV QFIGVNHHNQ AVIFAAALLF DDTVESLKWL FNTFLEAMSG 300 KKPKVILTDQ DAAIVEAINS ILPETSHRIC VWQMYQNALK HLSLVVKDIE SFSNDFRSCI 360 YDYNNEEAFV HVWECLLDKY GLQQNDRLRW MFREREKWSI AYDRNTFFLD MKGSHVAEDL 420 SNNLRSYLNS DQDALQIYKI FERVVDEQRL KEIHANDEMT RCMPRILGNV VLLKHASGIY 480 TPKAFELFQK EYEKCLNVLV TQCNGKGVLL EYKVSTFGQA QEYTVTFNSA DDTVVCNCMK 540 FENVGFLCGH ALKVLDNWNI KVVPSRYILK RWTKDTGLGR VRNSSEFTAK ENSKLVVASR 600 YENLCRNILK ISARAAESED AFQFALRRLD ELIEGVEKIL MLKDEGGQGI NSSSTVLNGF 660 ESENAEYFFD EKELEDLGED NGVDGTKEKE NAAPERHQLK NINGKSCKKK RFQLGQTPSP 720 NTSSCISSPP KACVMTEGPT HNPLLQGLYN FEANQVVQCM YQQQNPIMDH EDYPNMYQQS 780 IFFADQHVSP TQTPLLHEPL IRSAYHESLT NNALLRQAMD LDLQRPHSSS ISLYDHGFRT 840 SDTSYLGLY*

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence Send to blast

MVIGLQMSDN LDLSLDEDCS SLSFALVNSS QFSNSSKDGV HRGGVLKIGT EFESDEHAYI  60
SYNKYAKTVG FSVRKDWVNR SKVHGLVVSR KFTCSKEGYR RIDKRDLNMK KHRKETRTGC  120
LAHMIVTRQP YGKEIHVDQA AEGELPSKSG TESSSTFELK NRQFEGWQSL DYLAMDFDNS  180
LQSERIRDMK EGEAGRLLRY FQRQHIENPS FIHSIQVDID DKVRNLFWAD DKMVVDYDHF  240
GDVVCLDTSY RMNKDLQPFV QFIGVNHHNQ AVIFAAALLF DDTVESLKWL FNTFLEAMSG  300
KKPKVILTDQ DAAIVEAINS ILPETSHRIC VWQMYQNALK HLSLVVKDIE SFSNDFRSCI  360
YDYNNEEAFV HVWECLLDKY GLQQNDRLRW MFREREKWSI AYDRNTFFLD MKGSHVAEDL  420
SNNLRSYLNS DQDALQIYKI FERVVDEQRL KEIHANDEMT RCMPRILGNV VLLKHASGIY  480
TPKAFELFQK EYEKCLNVLV TQCNGKGVLL EYKVSTFGQA QEYTVTFNSA DDTVVCNCMK  540
FENVGFLCGH ALKVLDNWNI KVVPSRYILK RWTKDTGLGR VRNSSEFTAK ENSKLVVASR  600
YENLCRNILK ISARAAESED AFQFALRRLD ELIEGVEKIL MLKDEGGQGI NSSSTVLNGF  660
ESENAEYFFD EKELEDLGED NGVDGTKEKE NAAPERHQLK NINGKSCKKK RFQLGQTPSP  720
NTSSCISSPP KACVMTEGPT HNPLLQGLYN FEANQVVQCM YQQQNPIMDH EDYPNMYQQS  780
IFFADQHVSP TQTPLLHEPL IRSAYHESLT NNALLRQAMD LDLQRPHSSS ISLYDHGFRT  840
SDTSYLGLY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1070s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006377078.2	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	A0A3N7FUN9	0.0	A0A3N7FUN9_POPTR; Uncharacterized protein
STRING	POPTR_0012s13550.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-101	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	SapurV1A.1070s0010.1.p