PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1064s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 532aa MW: 57405.7 Da PI: 8.6222 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.7 | 7.5e-31 | 295 | 353 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ SapurV1A.1064s0010.1.p 295 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAgGCPVRKQVQRCAEDKTILITTYEGNHNHP 353 7****************************9****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-33 | 279 | 355 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.2E-27 | 287 | 355 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.998 | 289 | 355 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-36 | 294 | 354 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 296 | 353 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MDKQGRELVF FHSGDFLCQN LGVSDHLNDR SSDHTKPMIE EVDFFSTDRT SKLPGTGQEK 60 KISTIGSSST LVDSSINTGL NLLTSSSGIS KIANVKNPNN NELSLLQGEL VRLHDENKKL 120 RSLLDQITRS YKDLQAQLLM ATHKQFYKMF HCGTCRENTS TLSFFHVGNS PPRTLVKNHV 180 KGELNDTPSS IMSAQHFMDP RPRPPVTLDV NDPSVSDDKT PEVLVSSTNT VETKSQMLGK 240 RASIEDAGLE QTSQSWGSPK SPKLEHEKPD EQIPEVPFRK ARVSVRARSE APLISDGCQW 300 RKYGQKMAKG NPCPRAYYRC TMAGGCPVRK QVQRCAEDKT ILITTYEGNH NHPLPPAATA 360 MASTTSAAAA MLLSGSTTSK EGLSSSSSFY PSFPYASAMA TLSASAPFPT ITLDLTQGPN 420 TTMPFHRTSP SPATFPLPLH GSQQLLGHPM YASPRLPAIP PVQLGQRNAS MVETVTAAIA 480 SDPNFTAALA AAISTFMGTP RSGDGANNAN APGRIPGSPQ LPQSCTTFST N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 281 | 357 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00115 | ampDAP | Transfer from AT4G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1064s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148577 | 0.0 | EF148577.1 Populus trichocarpa x Populus deltoides clone WS0134_F08 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024440069.1 | 0.0 | probable WRKY transcription factor 47 | ||||
TrEMBL | A9PJI8 | 0.0 | A9PJI8_9ROSI; Uncharacterized protein | ||||
STRING | POPTR_0014s10750.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10439 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01720.1 | 8e-90 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1064s0010.1.p |