PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1060s0060.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 500aa MW: 53202.2 Da PI: 8.7178 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H SapurV1A.1060s0060.1.p 69 FVCEICNKGFQRDQNLQLHRRGH 91 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.21E-7 | 68 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 68 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 7.9E-5 | 69 | 91 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 69 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 110 | 140 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.9E-5 | 133 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.21E-7 | 140 | 166 | No hit | No description |
SMART | SM00355 | 100 | 145 | 165 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MVDVENSSRM TVSTASGEDT NVSSFVNQGM PLSVTVPPPK KRRNLPGMPD PDAEVVALSP 60 NFLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TNKEPRKRVY VCPEPSCVHH 120 NPVRALGDLT GIKKHFSRKH GEKKWKCERC SKKYAVQSDC KAHMKTCGTR EYKCDCGTLF 180 SRRDSFITHR AFCDALTGKE GDGYSIKCVV TSPPPPPLTP STSVVSPGLS VQSSELAENP 240 IGLSPPTPVA TCLDASATST SSTSSTSNVF ASIFASSTAP PAAIPRRASP PSAFPMFCGL 300 ARSDCPPTMP ARRATEPPSL SLSTSVYLSN TLSSPFPADQ DHRHYTPSPQ PAMSATALLQ 360 KAAQMGATTS NPSFLRGLGL PPSTNQDGNG NQWDMMPDNK TTFAAGLGLV LPSCDVMMNS 420 FSLLGNKPTT LDLLGLGMDA VSSALLNSYG TGGFNVGEAA AAAAAYGGGE RGNSEESWDV 480 VPERKPNGSS TTTSLKSSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-32 | 141 | 197 | 3 | 59 | Zinc finger protein JACKDAW |
5b3h_F | 4e-32 | 141 | 197 | 3 | 59 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1060s0060.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB193578 | 1e-171 | AB193578.1 Salix hukaoana DNA, microsatellite, clone:Shuk197. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002320649.2 | 0.0 | protein indeterminate-domain 2 | ||||
Swissprot | Q9LVQ7 | 1e-127 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | B9IBT2 | 0.0 | B9IBT2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s17900.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2218 | 32 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-105 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1060s0060.1.p |
Publications ? help Back to Top | |||
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