PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1059s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 306aa    MW: 33664.8 Da    PI: 9.2833
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1059s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00052120142123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             y+C+ C+++F++   L  H  +H
  SapurV1A.1059s0050.1.p 120 YQCKTCDRRFPSFQALGGHRASH 142
                             9***********99999998887 PP
2zf-C2H2130.00031203225123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C+ Cg  Fs+   L  H+r+H
  SapurV1A.1059s0050.1.p 203 HECSVCGAEFSSGQALGGHMRRH 225
                             78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.8E-12119145IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.843120147IPR007087Zinc finger, C2H2
SMARTSM003550.04120142IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.06E-8120142No hitNo description
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
SuperFamilySSF576672.06E-8198225No hitNo description
Gene3DG3DSA:3.30.160.607.0E-4201225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.8E-13202227IPR007087Zinc finger, C2H2
PROSITE profilePS501579.764203225IPR007087Zinc finger, C2H2
SMARTSM003550.012203225IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280205225IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MIMDSQDQTM GSKELAHIIK GKRTKRPRSS LPLTLAIITS SSSYSAGESG GERDRRIYNN  60
STSSSPSPST SFEFTERTGE EEDMANCLIL LARGNETCKL AKPVATAATA VNREAGLYAY  120
QCKTCDRRFP SFQALGGHRA SHRKQKPGNL DHENKKVLTM VRLAREEENG NRSNISTSTT  180
LSLQVVNERV LWNPNYVKSN KVHECSVCGA EFSSGQALGG HMRRHRAFAS TSTTTRTTTA  240
ATMSLGRISS PDRESQESKK PRNSLQLDLN LPAPEDDHLV EPKFHFASKE QVLVFTASPL  300
VDCHF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1059s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018810.11e-153PREDICTED: zinc finger protein ZAT5-like
TrEMBLB9IFU21e-112B9IFU2_POPTR; Uncharacterized protein
STRINGPOPTR_0016s10790.11e-113(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.16e-46C2H2 family protein