PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1056s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HB-other | ||||||||
Protein Properties | Length: 861aa MW: 96047.6 Da PI: 5.5437 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 15.2 | 3.6e-05 | 726 | 786 | 1 | 54 |
TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt ++++q+ +e++ ++ + +a++ + ++kl ++t +q k+W Nr+a+ SapurV1A.1056s0040.1.p 726 KRKRTIMNDYQIALMEKALLDEPEMqrNAAALQSWSDKLslngsEVTPSQLKNWLNNRKAR 786 79*****************997777225678999*****9999999**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-4 | 714 | 789 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.799 | 723 | 790 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.4E-6 | 725 | 794 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.48E-5 | 726 | 789 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 861 aa Download sequence Send to blast |
MRLAKEEPSM AEQVIDLISA VKELHGLSCQ ELNKLLRDSE NFTIHYHSEK GSTIKIDVEK 60 LAGFLPLHLI AVLMSSDRDE SLLRYLLCGI RLLHSLCDLA PRNSKLEQVL LDDVKVSEQL 120 LDLVFYLLIV LSGYRQENRI SCSLLLVHSA LVASSLHLLS GCISLQWQDL VQVLLAHPKV 180 DIFMDAAFGA VHVAIRFLQV KLSDQYTGLH VKSPTAEQIV NYICQQCEAS LQILLSLCQQ 240 KVFRERLLRN KELCGRGGVL SLAQAILNLN VTPPFVDSFT VVAAISRLKA KVLSILLHLC 300 EAESISYLDE VASSPGSLDL AKSVVLEILE LLKAALSKDP NYLSPCSDKT FPMGLLRLNA 360 MRLADIFSDD SNFRSFITTC FTKVMTAIFS LPREDFISIW CSSEFPPREE DATLEYDTFA 420 AAGWFLDTFA AANLSNAINL EITLLPSNMP QAMYAHQRTS LFVKLIANLH CFVPNICEEQ 480 ERNLFLHKFL ECMRMDPSKS LPGFSFTSGA QRAVTVCRNL RSLLSHAESL IPNFLNEDDV 540 QLLRVFFNQL QSLINPADFE ENKVQEIKSE RSVSLDKFSR LSIDEHLQEA QSTRASSSPM 600 MRKEPSSFNN RTDIQKEEMS ENSAIQEEEK HSFRNEHVNQ ANVMRGDKAK FGACASDVLR 660 EMDRDSHNVE TSGSDTSSTR GKSFVGQVVN GDLLKSSAHM KGSGCQGVHN GEKSESLHFE 720 EKQPRKRKRT IMNDYQIALM EKALLDEPEM QRNAAALQSW SDKLSLNGSE VTPSQLKNWL 780 NNRKARLARA GKDVRAPMEV DVTFPENQVG QALQHESPES PGEDNITSSV RGLQNTSEIG 840 VFEDPEAGIG LSDFVDIGAS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 721 | 727 | KQPRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1056s0040.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182665 | 1e-131 | AC182665.2 Populus trichocarpa clone Pop1-18D20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024451145.1 | 0.0 | nodulin homeobox isoform X3 | ||||
TrEMBL | A0A3N7ESX6 | 0.0 | A0A3N7ESX6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s22800.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3869 | 4 | 6 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1056s0040.1.p |