PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1054s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Dof
Protein Properties Length: 495aa    MW: 53532.3 Da    PI: 7.1232
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1054s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.61.3e-38100159261
                  zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                             ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ 
  SapurV1A.1054s0020.1.p 100 PDKILPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTVRNVPIGAGRRKNKHL 159
                             7899*****************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2992157IPR003851Zinc finger, Dof-type
PfamPF027018.2E-32102158IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.574104158IPR003851Zinc finger, Dof-type
PROSITE patternPS013610106142IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MKGDSKDPAF KLFGRQIPVP DPQFPAETLA KGSCGDITKL ETKGPSEENS EKPEILSVLG  60
QGEEEMPAAM QVNETEVIAK PMEGQVEANV TDKERVFKKP DKILPCPRCN SLDTKFCYFN  120
NYNVNQPRHF CKNCQRYWTA GGTVRNVPIG AGRRKNKHLA TQYRQILVSS DGMPIARMEN  180
SDSAGHQLPS SVESATTLRP STTNGMVLKF GPEAPLCDSM ETVLNLGDPK RYEMSSVNYQ  240
DNGEEPPSCG SSKAASIVRE NELPENITKE QVDLPASSNN LGAPHSLHCY PVPSWVFPRN  300
PAWNNVTSMA AAQHSSGQAC ITNVPTQVQL CPTPMVAVPS ICPLNIPLQF VPASYWGCMP  360
TWTAGTGNVP LCGSNACLSP SSSTSTSCCS GNGSSPKLGK HSRDSKFMDE EKTEKCILVP  420
KTLRIDDPSA ASKSQWSTFG LPPNQKDPTS KVTIFKNLET RAEGRGRGHA SDAVNVLEVN  480
PAALSRSHTF QESG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1054s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325441.20.0cyclic dof factor 3 isoform X1
TrEMBLA0A2K1WPB40.0A0A2K1WPB4_POPTR; Uncharacterized protein
STRINGPOPTR_0019s05720.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35023165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.28e-53cycling DOF factor 2