PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1043s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 377aa MW: 41574.1 Da PI: 6.1135 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.3 | 8.5e-30 | 134 | 195 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK + g+++pr+YYrCt++ gC ++k+v+rs+edp+++eitY+g+H+++ SapurV1A.1043s0030.1.p 134 LDDGFSWRKYGQKAILGAKYPRGYYRCTHRnvqGCLATKQVQRSDEDPTIFEITYRGRHTCT 195 59***************************98999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.284 | 129 | 192 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.6E-29 | 131 | 196 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-26 | 133 | 196 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.1E-42 | 134 | 196 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-27 | 135 | 194 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MANMGDWEQK NLVEELTLGM ELAKQLQIHL NVSSSPRETR EMLLQGILTS YEKALSMLNL 60 GGGSVAGELH PVGGIPIRNS ESPPSLSGSP RSEDSDRDTR EQRHIDYGSS SRKSMPRWTK 120 KVRVNPGMGL EGPLDDGFSW RKYGQKAILG AKYPRGYYRC THRNVQGCLA TKQVQRSDED 180 PTIFEITYRG RHTCTQASKS LPPSQLGSEN QGPTTKITIE PQQNQPRQEN NPHTQELLLN 240 FRRGLKVITE ELDSSGQQSF PADHTFQFPS TSTVEPENSS LFAPSMVENN FMGSLPPSFI 300 KPSGSATNYY SVSPNDQIQQ SFAGNKNYQS SEPELTDHII SAAASTTTSN TVGLDFPYGK 360 VDIDPSFTFD NSGFLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-20 | 134 | 194 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1043s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318373.1 | 0.0 | probable WRKY transcription factor 30 | ||||
TrEMBL | A0A3Q9EE23 | 0.0 | A0A3Q9EE23_POPTO; WRKY DNA-binding protein 30 | ||||
TrEMBL | B9I540 | 0.0 | B9I540_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s01380.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 5e-61 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1043s0030.1.p |