PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1020s0030.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 415aa    MW: 45944.3 Da    PI: 8.2197
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1020s0030.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.9e-32270325156
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                             k r++W+peLH++Fv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  SapurV1A.1020s0030.2.p 270 KHRRCWSPELHRQFVNALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 325
                             68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.679267327IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-29267328IPR009057Homeodomain-like
SuperFamilySSF466897.99E-18268328IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-26270325IPR006447Myb domain, plants
PfamPF002498.1E-8272323IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGSVPSELSL GFVRPSSTTK TLTFFPETIA DFLNEVSMIG DAAVKGLKVD SFLSDFEEEK  60
RKIDAFRREL PLCMLLLNDA IQVVREGLMQ CGTSRNQRPL LEEFIPLKKK IEDRGDDHEN  120
DGLIKEKDSK DKKNWMSSVQ LWITDDHHPS TDYLFDAKQN PKLESKTNKK ANQYVNEDAF  180
QACKGRTAAR TFMPFKAYPG SSRKEDGSNR EELPVPALSL LTPGIKSVKE ESNSTGSRSS  240
CSRSVSPTSA PNPESNLRNG PQSQHKSSRK HRRCWSPELH RQFVNALQQL GGSQVATPKQ  300
IRELMQVDGL TNDEVKSHLQ KYRLHTRRVP PATASAPENQ SVIVLGGLSM TQDRYGDSSK  360
ANSSQSGSPQ GPLQVAVNTG GTSTTGGDSM EDDEDAKYEG YSWKSHIHRS GKDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-13270323154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-13270323154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-13270323154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-13270323154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1020s0030.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1475970.0EF147597.1 Populus trichocarpa clone WS0123_L02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384452.10.0transcription factor HHO6
TrEMBLB9N4V00.0B9N4V0_POPTR; Uncharacterized protein
STRINGPOPTR_0004s15220.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-55G2-like family protein