PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1020s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 416aa MW: 46072.4 Da PI: 8.2197 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.9 | 3e-30 | 270 | 326 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRla 56 k r++W+peLH++Fv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQ kYRl+ SapurV1A.1020s0030.1.p 270 KHRRCWSPELHRQFVNALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQqKYRLH 326 68************************************************549**97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-27 | 267 | 329 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.746 | 267 | 327 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-14 | 268 | 329 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-24 | 270 | 326 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-6 | 272 | 321 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MGSVPSELSL GFVRPSSTTK TLTFFPETIA DFLNEVSMIG DAAVKGLKVD SFLSDFEEEK 60 RKIDAFRREL PLCMLLLNDA IQVVREGLMQ CGTSRNQRPL LEEFIPLKKK IEDRGDDHEN 120 DGLIKEKDSK DKKNWMSSVQ LWITDDHHPS TDYLFDAKQN PKLESKTNKK ANQYVNEDAF 180 QACKGRTAAR TFMPFKAYPG SSRKEDGSNR EELPVPALSL LTPGIKSVKE ESNSTGSRSS 240 CSRSVSPTSA PNPESNLRNG PQSQHKSSRK HRRCWSPELH RQFVNALQQL GGSQVATPKQ 300 IRELMQVDGL TNDEVKSHLQ QKYRLHTRRV PPATASAPEN QSVIVLGGLS MTQDRYGDSS 360 KANSSQSGSP QGPLQVAVNT GGTSTTGGDS MEDDEDAKYE GYSWKSHIHR SGKDV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1020s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147597 | 0.0 | EF147597.1 Populus trichocarpa clone WS0123_L02 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006384452.1 | 0.0 | transcription factor HHO6 | ||||
TrEMBL | B9N4V0 | 0.0 | B9N4V0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s15220.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 1e-53 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1020s0030.1.p |