PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1018s0120.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SBP | ||||||||
Protein Properties | Length: 322aa MW: 35409.4 Da PI: 8.6052 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.7 | 5e-41 | 84 | 161 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v+gC+ dls++++yhrr kvCe hsk+p+v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ SapurV1A.1018s0120.3.p 84 MCLVDGCSLDLSTCRDYHRRQKVCELHSKTPQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 161 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-33 | 78 | 146 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.24 | 82 | 159 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.45E-38 | 83 | 164 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.0E-31 | 85 | 158 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MDWNLKAPSW DLTEFEQGAA PSISTDAFDR PTNSGVNRSG GGFSIDLKLG RVGNSGGESM 60 INWNQPSGST KRARGANNGA QVAMCLVDGC SLDLSTCRDY HRRQKVCELH SKTPQVTIGG 120 QKQRFCQQCS RFHSLEEFDE GKRSCRKRLD GHNRRRRKPQ PDPFSHPSSF LSNHRGTQIF 180 PFSIPHVNPS TPAVSSTWSG VANTEADGRN YNLHQLPDKQ NLFFGSSSNS YKGVKLRPFL 240 QCDNPCLNNQ TSSEASVCQP LPSAVGFQGS SGASSHGMFC DRLTTQVQDS DCALSLFCQK 300 HRRMDAETSC CNITHSPFRI P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-28 | 75 | 158 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 158 | KRSCRKRLDGHNRRRRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1018s0120.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322273.3 | 1e-170 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_024441807.1 | 1e-170 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_024441808.1 | 1e-170 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_024441809.1 | 1e-170 | squamosa promoter-binding-like protein 13A | ||||
TrEMBL | A0A2K1YBM5 | 0.0 | A0A2K1YBM5_POPTR; SBP family protein | ||||
STRING | POPTR_0012s10260.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 6e-62 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1018s0120.3.p |