PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1018s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 322aa    MW: 35409.4 Da    PI: 8.6052
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1018s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.75e-4184161178
                             --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                     SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                             +C v+gC+ dls++++yhrr kvCe hsk+p+v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  SapurV1A.1018s0120.1.p  84 MCLVDGCSLDLSTCRDYHRRQKVCELHSKTPQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 161
                             6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-3378146IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.2482159IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.45E-3883164IPR004333Transcription factor, SBP-box
PfamPF031108.0E-3185158IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDWNLKAPSW DLTEFEQGAA PSISTDAFDR PTNSGVNRSG GGFSIDLKLG RVGNSGGESM  60
INWNQPSGST KRARGANNGA QVAMCLVDGC SLDLSTCRDY HRRQKVCELH SKTPQVTIGG  120
QKQRFCQQCS RFHSLEEFDE GKRSCRKRLD GHNRRRRKPQ PDPFSHPSSF LSNHRGTQIF  180
PFSIPHVNPS TPAVSSTWSG VANTEADGRN YNLHQLPDKQ NLFFGSSSNS YKGVKLRPFL  240
QCDNPCLNNQ TSSEASVCQP LPSAVGFQGS SGASSHGMFC DRLTTQVQDS DCALSLFCQK  300
HRRMDAETSC CNITHSPFRI P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-2875158184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141158KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1018s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322273.31e-170squamosa promoter-binding-like protein 13A
RefseqXP_024441807.11e-170squamosa promoter-binding-like protein 13A
RefseqXP_024441808.11e-170squamosa promoter-binding-like protein 13A
RefseqXP_024441809.11e-170squamosa promoter-binding-like protein 13A
TrEMBLA0A2K1YBM50.0A0A2K1YBM5_POPTR; SBP family protein
STRINGPOPTR_0012s10260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.16e-62SBP family protein