PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1014s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TALE | ||||||||
Protein Properties | Length: 803aa MW: 86497.3 Da PI: 6.8196 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.4 | 2.9e-09 | 572 | 609 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + SapurV1A.1014s0020.1.p 572 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 609 664459******************************88 PP | |||||||
2 | BELL | 79.7 | 4e-26 | 459 | 511 | 1 | 53 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslA 53 +r e+q+kk+kLls+l+eVd+rY++y+eq+q+v++sF+ v+g g+a pYt l SapurV1A.1014s0020.1.p 459 DRIEHQRKKVKLLSMLDEVDQRYNHYCEQMQMVVNSFDLVMGFGAAVPYTLLG 511 589***********************************************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.8E-56 | 381 | 523 | IPR006563 | POX domain |
Pfam | PF07526 | 9.3E-39 | 386 | 511 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.568 | 550 | 613 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-9 | 553 | 617 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.35E-13 | 553 | 614 | No hit | No description |
SuperFamily | SSF46689 | 3.51E-17 | 555 | 620 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.8E-29 | 556 | 619 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.1E-18 | 570 | 609 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 803 aa Download sequence Send to blast |
MGIATPPFPP ILPHSKTHQQ IPPDINSNPS NHNSMSQDYH QGIFSFSNGG FERSSVSHQE 60 HNQQQQHQQQ QQHEIAQQIR RGKLRIQSDY EPPPPALVGI GEGAEEESSG LPVYETVGML 120 SEMFNFPPAP AAAVDLLEQH VQSNYRTQPR QQQSATTNDW YNRNNRQSMT VGGLGIGDSK 180 NHNNNNSNRD TLAQHQHQIA GFNANSAAAM QLFLMNPSQP RSPKSPSPSH NQTPHSASST 240 LHMLLPNPSS SLQGFSAVSG GGFGATSVIS PPQFTWVSDS SHEGGNTGAP LNNPSEIIGV 300 VEGQGLSLSL SSSLQHLEAA KAEELRMGSG GLLYYNQGAG GSSSAQYYKN SGGHQNHQVL 360 HLQGGEGQNH HQVQVGFGSS LGVVNVLRNS KYVKAAQELL EEFCSVGRGQ FKKSKFGTQN 420 TNPSSKNNPG GGGGGGDGGG GGGGSSSSTI DLPHMSAADR IEHQRKKVKL LSMLDEVDQR 480 YNHYCEQMQM VVNSFDLVMG FGAAVPYTLL GEKDGAGTSA ITKGETPRLK LLEQSLRQQR 540 AFHQMGMMEQ EAWRPQRGLP ERSVNILRAW LFEHFLHPYP SDADKHLLAR QTGLSRNQVS 600 NWFINARVRL WKPMVEEMYQ QESKEEEPPG PEDRERKPAT SSTNSGLAQT PTPTKTATGS 660 SAPAATTTST PSGKRSEINA NENDPSLLAI NRQCFSENQA KLSTTIIAPA NIASTTEMAP 720 QPHDGQSFHD FADDTCRHGS IVTADYGTTS GDANTGADHI GSTLIRFGTP AAGDVSLTLG 780 LRHAGNMPEK SPTFSVRDFG GC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 559 | 617 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 559 | 617 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 2e-16 | 559 | 616 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 559 | 616 | 1 | 58 | Homeobox protein Meis1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1014s0020.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011009913.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Refseq | XP_011009914.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
TrEMBL | B9H697 | 0.0 | B9H697_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s13780.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3524 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 1e-126 | BEL1-like homeodomain 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1014s0020.1.p |