PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1001s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 391aa    MW: 42885 Da    PI: 7.8911
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1001s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.31.3e-31226281156
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                             kpr++W+peLH+rF++a++qLGGs+  tPk+i+elmkv+gLt+++vkSHLQkYRl+
  SapurV1A.1001s0050.1.p 226 KPRRCWSPELHRRFLHALQQLGGSHASTPKQIRELMKVDGLTNDEVKSHLQKYRLH 281
                             79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-29223284IPR009057Homeodomain-like
PROSITE profilePS5129413.976223283IPR017930Myb domain
SuperFamilySSF466894.3E-18224284IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-26226281IPR006447Myb domain, plants
PfamPF002491.6E-7228279IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDFAEKMQRC HEYVEALEAE RRKIQVFERE LPLCLELVTQ AIEACKRELS GTTADHNMNG  60
QPECSEQTSS EGPVLEEFIP IKRTHSSDDD ENDNNHDDDD DFQEQQSQNN NNNKRNKSNS  120
SNSNSDHKKK SDWLRSVQLW NQSPDPPPKQ DLPRKAAVTE VTRNGAGGAF QPFHREKSVG  180
KSSNQAIKAP TSVPASAISS TAGAVTGGTG GGGNKREDKE EGNQRKPRRC WSPELHRRFL  240
HALQQLGGSH ASTPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPNPTIH NNSNQQAPQF  300
VVVGGIWVPP AEYAAVAATI SGETSTISAA NGMCARKAAA PPAAPQNRQN TQSEHLRSEG  360
RGSRCERGSH SSNSPSTSSS THTTTTSPVF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-13226279154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-13226279154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-13226279154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-13226279154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1001s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462049.10.0transcription factor HHO2
SwissprotQ9FPE81e-108HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A2I4KKV80.0A0A2I4KKV8_POPTR; G2-like family protein
STRINGPOPTR_0010s13900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.18e-93G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]