PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0991s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CPP
Protein Properties Length: 496aa    MW: 53656.3 Da    PI: 7.736
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0991s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.22.5e-16100139140
                     TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                             k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  SapurV1A.0991s0010.1.p 100 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 139
                             589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163417.8411140IPR005172CRC domain
SMARTSM011148.4E-20100141IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.1E-13103138IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MGESEGSEFP PKKQQQSETA DFPAKKLARQ LDFTQGVLPD HPQSQLSPVV VTPLSAQCQL  60
QPHPQPQPQV VSILESPQQQ TQQQPAVRVE ETGEGLVFVK HNKGCHCKKS GCLKKYCECF  120
QANILCSENC KCMDCKNFEG SEERQALFHG DHGNNMAYIQ QAANAAITGA IGSSGYASLP  180
VSRKRKSQEL FFGKTVKDPS FHRLGHFQQA SHIRHAALSS LLPSNPVASA GNTTTLGSSK  240
ITYRSLLADI IQSQDLKELC SVLVVLSGEV AKTLSDQRNS TKKRVEDQRD TFPDSSTQER  300
LQSQKEFDAD KIVSNRSSAN HADEGAPDDC SLDSADMPKG RPMSPGTLAL MCDEQDTIFM  360
AAASPNGLMG YGCNSSSQLP CRQGMTEAHA EQERIVLTKF RDCLNRLITF GEIKETKCSS  420
LARTELGNEK GPPSKGIANT RTGTGSQQGP FSNGVVKVPP AAKPPQMVTS IVATSSSDLQ  480
KFQSLPQNGD NKLKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-168814971132Protein lin-54 homolog
5fd3_B2e-168814971132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0991s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142821e-176AC214282.1 Populus trichocarpa clone POP018-K04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012707.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
RefseqXP_011012708.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
RefseqXP_011012709.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X2
SwissprotQ9SZD11e-128TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2K2A3580.0A0A2K2A358_POPTR; Uncharacterized protein
STRINGPOPTR_0006s16340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-131Tesmin/TSO1-like CXC domain-containing protein