PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0987s0050.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LSD | ||||||||
Protein Properties | Length: 157aa MW: 16090.8 Da PI: 8.0698 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.1 | 1.4e-13 | 39 | 63 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V SapurV1A.0987s0050.4.p 39 CSGCRNLLLYPVGATSVCCAVCNAV 63 ************************9 PP | |||||||
2 | zf-LSD1 | 44.1 | 3.3e-14 | 78 | 102 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gC+tlL+Y rGA+sV+C++C+tV SapurV1A.0987s0050.4.p 78 CVGCHTLLMYIRGATSVQCSCCHTV 102 ************************9 PP | |||||||
3 | zf-LSD1 | 41.6 | 2e-13 | 116 | 140 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V SapurV1A.0987s0050.4.p 116 CGSCRMLLMYQYGARSVKCAVCNFV 140 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.1E-12 | 36 | 66 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.6E-10 | 39 | 63 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 3.07E-5 | 39 | 137 | IPR011031 | Multihaem cytochrome |
TIGRFAMs | TIGR01053 | 1.2E-13 | 75 | 104 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-11 | 78 | 102 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.1E-13 | 113 | 141 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.6E-12 | 116 | 140 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MPVPLAPYPT PPAPYAPPAP APAPAPPPPA NGAQSQLVCS GCRNLLLYPV GATSVCCAVC 60 NAVTAVPPPG TEMAQLVCVG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVNCGSCR 120 MLLMYQYGAR SVKCAVCNFV TPVGVSSSGN ERKFNT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0987s0050.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU232247 | 1e-105 | CU232247.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021593714.1 | 1e-87 | protein LOL1 | ||||
Refseq | XP_021593716.1 | 1e-87 | protein LOL1 | ||||
Refseq | XP_021593717.1 | 1e-87 | protein LOL1 | ||||
Refseq | XP_021593718.1 | 1e-87 | protein LOL1 | ||||
Swissprot | Q93ZB1 | 1e-77 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A2C9UHS8 | 3e-86 | A0A2C9UHS8_MANES; Uncharacterized protein | ||||
TrEMBL | A0A2G5CPJ2 | 3e-86 | A0A2G5CPJ2_AQUCA; Uncharacterized protein | ||||
STRING | cassava4.1_018557m | 4e-87 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 5e-63 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0987s0050.4.p |
Publications ? help Back to Top | |||
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