PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0987s0050.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LSD
Protein Properties Length: 158aa    MW: 16219 Da    PI: 8.0698
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0987s0050.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.11.4e-133963125
                 zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                            C+gCr+lL YP GA+sV+Ca+C++V
  SapurV1A.0987s0050.2.p 39 CSGCRNLLLYPVGATSVCCAVCNAV 63
                            ************************9 PP

2zf-LSD144.13.3e-1478102125
                 zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                             C gC+tlL+Y rGA+sV+C++C+tV
  SapurV1A.0987s0050.2.p  78 CVGCHTLLMYIRGATSVQCSCCHTV 102
                             ************************9 PP

3zf-LSD141.62e-13116140125
                 zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                             Cg+Cr lL+Y +GA+sV+Ca+C++V
  SapurV1A.0987s0050.2.p 116 CGSCRMLLMYQYGARSVKCAVCNFV 140
                             ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.1E-123666IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-103963IPR005735Zinc finger, LSD1-type
SuperFamilySSF486951.4E-539137IPR011031Multihaem cytochrome
Gene3DG3DSA:3.90.10.107.8E-453137No hitNo description
TIGRFAMsTIGR010531.2E-1375104IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-1178102IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.1E-13113141IPR005735Zinc finger, LSD1-type
PfamPF069432.6E-12116140IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPYAPPAP APAPAPPPPA NGAQSQLVCS GCRNLLLYPV GATSVCCAVC  60
NAVTAVPPPG TEMAQLVCVG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVNCGSCR  120
MLLMYQYGAR SVKCAVCNFV TPVGQVSSSG NERKFNT*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0987s0050.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2322474e-99CU232247.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593714.11e-85protein LOL1
RefseqXP_021593716.11e-85protein LOL1
RefseqXP_021593717.11e-85protein LOL1
RefseqXP_021593718.11e-85protein LOL1
SwissprotQ93ZB16e-76LOL1_ARATH; Protein LOL1
TrEMBLA0A2C9UHS82e-84A0A2C9UHS8_MANES; Uncharacterized protein
TrEMBLA0A2G5CPJ22e-84A0A2G5CPJ2_AQUCA; Uncharacterized protein
STRINGcassava4.1_018557m4e-85(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-61lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]